Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0328 ATGAAGAGGTTTTCTGCCTGCTGCTTCACAAGCAGAATCTCTAAGTTTCACTCTCACAGGAAGCATAACCAATCTCAGATCATGGCAGGAAACATTTCTGATCCAAGTGGGAGCAAGGGTGCAAATATTTTACTTAATCATGACTTTTCTAGTGGCCTGAGCTCCTGGCATCTCAATTCCTGTTCTGGCTATGTGATTTCAGCTGAAACAGGTGCTCAAGGAGGAATTTCGAGGGAGTTGAGTGCTAATTATGCTGTTATCACTGACCGAAAGGAATGCTGGCAAGGCCTTGAGCAAGACATCACAGATAGAATTTCCACTGGTTACACTTACACAGTTTTGGCTTGTGTGGGAGTATCCAGTCTTTCTCAGGGATCTAGTGATGTTCTAGCTACTCTGAAACTAGAATATCATGATTCAGCTACTAGTTACTTGTTCATTGGAAGAACTTCTGTTAATAAGGATAGCTGGCAAAAGTTGGAAGGGACATTCTCATTGTCAACTATGCCTGATAGGGTTGTATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACCTGCTCATACGATCAGTGGAGATAAACTGTTCCACTCCAAATAATAATACCACAAGCACAGCATGTGTTTCAGCGGGAGATGACAACATCATCATCAACCCGCAATTTGATGATGGTCTGAATAACTGGTCTGGAAGAGGCTGCAAGATTATGTTGCATGATTCCATGAATGATGGGAAAATTGTTCCAAAATCAGGGAAATTCTTTGCATCTGCAACAGAACGCACACAGAACTGGAATGGAATCCAGCAAGATATCACTGGACGCGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTCAGTTAGAATCTTTGGAAACAATGTATCTACTGCTGATGTACGTGCTACTTTGTGGGTCCAAGCACCAGATCTTAAAGAACAATATATAGGCATTGCAAATTTGCAGGCAACAGATAAAGATTGGGTTACTATGCAGGGAAAATTCCTTCTAAATGGTTCTCCATCAAAAGTGGTCCTTTATTTAGAGGGGCCCCCTCCAGGCACTGACATTCTTCTCAATAATTTGGTCTTAAAGCATGCAGCTAAAACACCTCCTTCATCCCCACCAGATGTAAAGAATGTTACTTTTGGGGTTAATATAATTGAGAACAGCACTCTAGCTGATGGCACCAATGGATGGTTTCCCCTTGGCAATTGCACTTTAAGTGTTAAAACTGGTTCACCACATATAGTTCCACCAATGGCAAGAGATTCTCTTGGTCCTAGTGAACTCCTAAGTGGGCGCTACATCCTTGTAACTAATCGAACACAAACATGGATGGGTCCTGCTCAGATCATCACTGATAAAGTGAAACTCTTTTTGACTTATCAAGTGTCTGCTTGGGTCAGGATTGTCTCAGGATCATCAGGGCCACAGAATGTGAATGTTGCCCTTGGTGTTGACAACGAGTGGGTCAATGGAGGACAAACAGAGGTTTCTGATAACACGTGGCATGAAATTGGAGGGTCCTTTAGAATTGAAAAGCAGCCATCAAAGGTTATGGTTTATGTTCAAGGTCCTGCTTCTGGGGTGGACTTAATGGTGGCTGGACTTCAAATTTTTCCTGTGGATAGACATGCAAGATTGAGATATTTAAAGATCCAAACAAATAAGATACGTAAACGTGATGTTATCCTGAAATTCTCTGGGCTGGACTCTGGCAGCTACGCTAACACCTCAGTGCAAGTTAGACAAACACAGAATGATTTCCCAATTGGAACATGCATCAGTAGATCAAACATTGACAATGAGGACTTTGTTGATTTCATGGTGAAGCATTTTAACTGGGCTGTGTTTGGAAACGAGTTAAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTCAATTACAAGGATGCTGATGATCTGTTAAGCCTATGTCAGAAGCACAATATACAAACTCGTGGTCATTGTATCTTCTGGGATGTGGATGGCGTAGTTCAGCAGTGGATCAAATCACTGAACAATAACGATTTGATGACGGCTATTCAGAACCGCCTAAACGGGCTTCTAACTCGTTACAAGGGCAAGTTTAATCACTATGATGTCAACAATGAAATGCTGCATGGTTCATTCTTTCAAGATAGACTAGGCAAGGATATAAGGGCTAACATGTTCAAAACTGCAAACCAACTAGACCCTTCTGCTACACTCTTTGTGAATGATTATCATGTTGAGGATGGATGTGACACCAGATCATGTCCAGATAAGTACATCCATCATATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGAATTGGAATTCAGGGCCACATAGATAGTCCAATAGGGCCTATTGTGAGTTCTTCCCTTGACAAGTTGGGTATTCTTGGTCTACCTATATGGTTCACTGAGCTTGATGTGTCTTCCATCAATGAATACGTCAGAGCAGATGATCTTGAAGTTATGCTACGTGAGGCCATGGCTCATCCTGCAGTAGAAGGCATAATGCTGTGGGGTTTTTGGGAGCTGTTTATGAGTAGGGACAATGCACACTTGGTGAATGCAGAAGGTGACATCAATGAGGCAGGGAAAAGGTTCCTAGCTCTAAAACAAGAGTGGCTTTCTCACAGCCGTGGCCATGTTGATGAACAAGGCCAATACAACTTCAGAGGCTTTCATGGAACATACAATGTGCAAGTTGTGACCCCATCAAAGAAAATTTCTAAGACATTTGTGCTTGACAAAGGTGACACGCCACTGGTGCTGTCCATTGATTTATAA 2787 0.4255 MKRFSACCFTSRISKFHSHRKHNQSQIMAGNISDPSGSKGANILLNHDFSSGLSSWHLNSCSGYVISAETGAQGGISRELSANYAVITDRKECWQGLEQDITDRISTGYTYTVLACVGVSSLSQGSSDVLATLKLEYHDSATSYLFIGRTSVNKDSWQKLEGTFSLSTMPDRVVFYLEGPAPGVDLLIRSVEINCSTPNNNTTSTACVSAGDDNIIINPQFDDGLNNWSGRGCKIMLHDSMNDGKIVPKSGKFFASATERTQNWNGIQQDITGRVQRKLAYEVTASVRIFGNNVSTADVRATLWVQAPDLKEQYIGIANLQATDKDWVTMQGKFLLNGSPSKVVLYLEGPPPGTDILLNNLVLKHAAKTPPSSPPDVKNVTFGVNIIENSTLADGTNGWFPLGNCTLSVKTGSPHIVPPMARDSLGPSELLSGRYILVTNRTQTWMGPAQIITDKVKLFLTYQVSAWVRIVSGSSGPQNVNVALGVDNEWVNGGQTEVSDNTWHEIGGSFRIEKQPSKVMVYVQGPASGVDLMVAGLQIFPVDRHARLRYLKIQTNKIRKRDVILKFSGLDSGSYANTSVQVRQTQNDFPIGTCISRSNIDNEDFVDFMVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLLSLCQKHNIQTRGHCIFWDVDGVVQQWIKSLNNNDLMTAIQNRLNGLLTRYKGKFNHYDVNNEMLHGSFFQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHIDSPIGPIVSSSLDKLGILGLPIWFTELDVSSINEYVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDEQGQYNFRGFHGTYNVQVVTPSKKISKTFVLDKGDTPLVLSIDL* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0328 928 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 576 871 IPR001000 GO:0004553|GO:0005975
Pvu1g0328 928 SUPERFAMILY Galactose-binding domain-like 383 543 IPR008979 -
Pvu1g0328 928 Pfam Glycosyl hydrolase family 10 585 842 IPR001000 GO:0004553|GO:0005975
Pvu1g0328 928 SUPERFAMILY (Trans)glycosidases 576 879 IPR017853 -
Pvu1g0328 928 SUPERFAMILY Galactose-binding domain-like 212 366 IPR008979 -
Pvu1g0328 928 SMART glyco_10 622 872 IPR001000 GO:0004553|GO:0005975
Pvu1g0328 928 Pfam Carbohydrate binding domain 213 350 IPR003305 GO:0016798
Pvu1g0328 928 Pfam Carbohydrate binding domain 385 528 IPR003305 GO:0016798
Pvu1g0328 928 Pfam Carbohydrate binding domain 41 182 IPR003305 GO:0016798
Pvu1g0328 928 Gene3D - 383 540 - -
Pvu1g0328 928 Gene3D - 207 366 - -
Pvu1g0328 928 Gene3D - 36 195 - -
Pvu1g0328 928 PANTHER - 33 192 - -
Pvu1g0328 928 PANTHER - 202 928 - -
Pvu1g0328 928 SUPERFAMILY Galactose-binding domain-like 40 195 IPR008979 -
Pvu1g0328 928 PANTHER GLYCOSYL HYDROLASE 202 928 IPR044846 GO:0004553|GO:0005975
Pvu1g0328 928 PANTHER GLYCOSYL HYDROLASE 33 192 IPR044846 GO:0004553|GO:0005975
Pvu1g0328 928 Gene3D Glycosidases 574 884 - -
Pvu1g0328 928 Coils Coil 925 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0328 Pvu-Chr1 3121181 3127238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0328 1 928 Glycoside Hydrolase AT1G58370 65.962 0.0 1317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0328 - - gmx:100816678 1734.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0328 1 3121181 3127238 Pvu1g0328 1 3121181 3127238 ECH
Pvu1g0328 1 3121181 3127238 Pvu9g0775 9 12467267 12471784 PCT