Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0327 ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACAGGTCCAAGTCCAAGTCCAAGGCCTAATTTTCTGTACTCTTCACCTAGTGGTGGAAACCATAACCATCACCAGCATCAGCATCAGCATCAGCATCAGCATCATAGCCATCACCACCAGCATCATCAGTTTCCAATCAACACCTTCCATCTTCAATCGGGTGGAGCAGATCATTGCTTTCAGTCTGATCAAGTGGCACCACACCCTTCTGTGAAAACCGAAGCCAGCTCTTCTCAGCTTCACGCTCCTATTTTCCACTACCCTTTAATGAGAGGAAACCTCCACAACAACACCACCACCACCACCACTATGCATCACCATCCCCACCAACAAGGAGGAAGTCCAACCAGCTCCACTACCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCCAATCTTTTGGAAGCTTATATGGATTGCCAAAAGATAGGAGCTTCACCCGAAGTGGTGGCGCGTATGGTTGCGGCAAAGCAAGAGTTCGAGGCACGGCAAAGATCCTCAGGTGGTTCAAGGGATTCTTCAAAAGACCCTGAACTTGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAAGAATTAACAAGGCCTATTCAAGAAGCCATGGATTTCATGCGAAGGATAGAAACTCAACTAAATATGCTATGCAATGGACCCGTCAGGATCTTCTCTGAAGATAAATGTGAAGGGGTTGGTTCATCAGAAGATGATCAAGACAACAGTGGAGGAGAAACAGAACTTCCAGAGATTGATCCAAGAGCAGAAGATCGTGAACTTAAAAACCACTTGCTGAGAAAGTACAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTTTCTAAGAAGAAAAAGAAAGGGAAACTCCCCAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCCCAAAGTGCAACTCTCTACATGGATGGTCACTACATGGCTGATGGTCACTACCGTCTAGGGCCATGA 1194 0.4447 MEEYTNNNHLSENTGPSPSPRPNFLYSSPSGGNHNHHQHQHQHQHQHHSHHHQHHQFPINTFHLQSGGADHCFQSDQVAPHPSVKTEASSSQLHAPIFHYPLMRGNLHNNTTTTTTMHHHPHQQGGSPTSSTTEVEAIKAKIIAHPQYSNLLEAYMDCQKIGASPEVVARMVAAKQEFEARQRSSGGSRDSSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSEDKCEGVGSSEDDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0327 397 Pfam ELK domain 279 300 IPR005539 GO:0003677
Pvu1g0327 397 MobiDBLite consensus disorder prediction 1 35 - -
Pvu1g0327 397 ProSitePatterns 'Homeobox' domain signature. 337 360 IPR017970 GO:0000981|GO:0006355
Pvu1g0327 397 ProSiteProfiles 'Homeobox' domain profile. 299 362 IPR001356 GO:0003677
Pvu1g0327 397 CDD homeodomain 311 363 IPR001356 GO:0003677
Pvu1g0327 397 Pfam KNOX2 domain 192 237 IPR005541 GO:0003677|GO:0005634
Pvu1g0327 397 SUPERFAMILY Homeodomain-like 300 375 IPR009057 -
Pvu1g0327 397 ProSiteProfiles ELK domain profile. 279 299 IPR005539 GO:0003677
Pvu1g0327 397 SMART KNOX2_2 187 238 IPR005541 GO:0003677|GO:0005634
Pvu1g0327 397 SMART HOX_1 301 366 IPR001356 GO:0003677
Pvu1g0327 397 MobiDBLite consensus disorder prediction 1 56 - -
Pvu1g0327 397 Gene3D - 304 366 - -
Pvu1g0327 397 SMART ELK_2 279 300 IPR005539 GO:0003677
Pvu1g0327 397 MobiDBLite consensus disorder prediction 110 131 - -
Pvu1g0327 397 MobiDBLite consensus disorder prediction 71 90 - -
Pvu1g0327 397 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 389 - -
Pvu1g0327 397 SMART KNOX1_2 136 180 IPR005540 GO:0003677|GO:0005634
Pvu1g0327 397 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 389 - -
Pvu1g0327 397 Pfam Homeobox KN domain 319 358 IPR008422 GO:0003677|GO:0006355
Pvu1g0327 397 Pfam KNOX1 domain 137 179 IPR005540 GO:0003677|GO:0005634
Pvu1g0327 397 MobiDBLite consensus disorder prediction 248 276 - -
Pvu1g0327 397 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0327 Pvu-Chr1 3078925 3084634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0327 69 397 Homeobox Transcription Factor Family AT4G08150 68.935 4.32e-154 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pvu1g0327 KNOX2 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0327 - - pvu:PHAVU_001G032200g 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0327 1 3078925 3084634 Pvu1g0327 1 3078925 3084634 ECH