Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0308 ATGTCTTCATCGGTGGATCTTCCTCCCAAGGGTGGCTTCAATTTTGATCTATGTCGAAGAAATGCCATGCTTGAAAACAAGGGTCTCAAAGCCCCAACCTTTTTGAAAACTGGGACCACTATAGTCGGTTTAGTTTTTCAGGATGGTGTCATTCTTGGAGCTGATACTAGAGCAACTGAAGGGCCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCTAACATATATTGCTGTGGAGCTGGCACTGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGTTCACAGCTGCAACTACATCGTTATCACACTGGTAGAGAATCCCGTGTTGTTACAGCGCTGACCCTTCTTAAAAAACACCTATTCAATTATCAAGGTCACGTCTCAGCTGCTTTAGTGCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACAATTTATCCTCATGGGTCTACTGACACTCTTCCATTTGCAACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCCAAGTACAAGGAAAGTTTAAGTAGGGATGAAGGCATAAAGATAGTTGTTGAGGCAATATGTGCTGGTATATTTAATGACTTGGGAAGTGGAAGTAATGTGGACGTTTGTGTGATAACTAAGGGACACAAGGAATATCTCAGGAACCACCTTCTACCAAATCCACGTACCTATGTCAATCCAAAAGGCTTTGAATTCCCCAAAAAGATAGAGGTTCTCTCAACAAAAATTACCCCGTTGAAGGAGAAGGTTGAAGTGATTGAAGGGGATGCCATGGAAGAGTAA 816 0.4228 MSSSVDLPPKGGFNFDLCRRNAMLENKGLKAPTFLKTGTTIVGLVFQDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKESLSRDEGIKIVVEAICAGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTYVNPKGFEFPKKIEVLSTKITPLKEKVEVIEGDAMEE* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0308 271 ProSitePatterns Proteasome beta-type subunits signature. 42 89 IPR016050 GO:0005839|GO:0051603
Pvu1g0308 271 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 39 271 IPR029055 -
Pvu1g0308 271 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 20 231 - -
Pvu1g0308 271 PANTHER PROTEASOME SUBUNIT BETA 20 231 - -
Pvu1g0308 271 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 11 230 IPR029055 -
Pvu1g0308 271 CDD proteasome_beta_type_7 39 227 - -
Pvu1g0308 271 ProSiteProfiles Proteasome beta-type subunit profile. 38 216 IPR023333 -
Pvu1g0308 271 Pfam Proteasome subunit 36 216 IPR001353 GO:0005839|GO:0051603
Pvu1g0308 271 PRINTS Proteasome component signature 46 61 IPR000243 GO:0004298|GO:0005839|GO:0051603
Pvu1g0308 271 PRINTS Proteasome component signature 166 177 IPR000243 GO:0004298|GO:0005839|GO:0051603
Pvu1g0308 271 PRINTS Proteasome component signature 177 188 IPR000243 GO:0004298|GO:0005839|GO:0051603
Pvu1g0308 271 PRINTS Proteasome component signature 202 213 IPR000243 GO:0004298|GO:0005839|GO:0051603
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0308 Pvu-Chr1 2781373 2785179 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0308 K02739 - gmx:100808133 536.184