Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0303 ATGGCCAATAATTCTCAGCCCTCCAGCATGCAGTTTCGGCCAGTCATTCAAGCTCAGCAAGGGCAACCATTTGTTCCAATGAATTCACAACAATTTGGACCTGCAGGACATGCTATTCCTTCTTCAAATGCGGGAATGCCTGTCATTCAAGGTCAACAGTTGCAATATTCTCAACCAATGCAGCAGTTGACTCCAAGGCCAATGCAGCCTGGTCATCTTGCTCCTTCATCACAACCTATACCCATGCCATATATCCAGACAAACAGACCAATGTCATCCATTCCACCTCATTCACAATCTGTTCCCCCCTTAAGCAATCATATGCCTGGCTTACCTGTTTCTGGAGCAGCTCCGCATTCTTCATATACTTTCACACCATCCTATGGTCAGCAGCATGATAATGCAAATGCATTGGCCCAATACCAGCATCCACCTCAAATGCTTGCTCCTCCTGGTGGTCAACCTTGGCTGTCGTCTGCATCTCAGAGTGTTGCACCTTCTACATCTGTGCAGCCGGCTGGGTTGCAATCATCTGGAGCGACATTGACTGATGCGGTAACTAATGCTACTAACCAGCACTCCTTATCTGATTGGCAAGAGCACACTTCTGGAGATGGGAGAAGATATTACTACAACAAGAGGACAAGGCAATCAAGTTGGGAGAAACCTTTGGAATTGATGTCACCTATTGAGAGGGCTGATGCATCGACTGTTTGGAAAGAATTCACTTCTTCAGATGGAAAAAAGTATTATTACAATAAGGTTACACAACAATCAACGTGGTCGATACCAGAGGAACTTCAGTTGGCTCGTGAGCAGGCACAAAAAGCTGCAAACCAGGGAATGCAGTCAGAAACAAGTGATACACCCAATGCTGCTGTCTCATCAATAGCCACATCAACGGCAACTAATGCAGCTAGCTTGAACCCTTCTTTGACGTCAAATGGGCTTGCTTCCAGCCCATCTTCTGTCACACCAATTGCATCAACCGATTCTCCGCAGTTGGTTTCTGGATTATTTGGCACCTCTGTTTCACAATCTACAGTTACCTCAAGCACAACAGGTGTTGAACCAAGCAGTGTGGGAACTACAAGTGCTGCACCTATACTAGTCGCAGGAGGCTCAGGACTATCCGAGAACTCACCTCAACTATCCAAAATGCCACCCATTGTTGAAAATCAAGCATCTCAAGATTTTGCTTCTGCGAATGGATCTTCTCCTCAAGATATTGAGGAAGCTAAAAAAGCATTGGCTGAGGTTGGGAAAAATAATGTGATTCCACCTGAGGAGAAAACCAATGATGATGAAACCTTGGTATATGCAAATAAGCTGGAAGCAAAAAATGCATTTAAAGCGCTTCTGGAATCTGTGAATGTTCAGTCTGATTGGACCTGGGAACAGGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTGAAAACGCTTGGTGAGCGAAAACAAGCTTTTAATGAGTATTTGGGCCAAAGGAAGAAGCTGGAGGCTGAAGAGAGACGCATGAAGCAGAAAAGAGCCCGCGAAGAATTCACAAAGATGTTGGAAGAATGCAAGGAACTTACATCCTCCATGAGATGGAGCAAAGCCATTAGTATGTTTGAAAATGATGAACGATTTAATGCTGTTGAAAGACCAAGAGACCGAGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGGAAGGAGAAGGAAAATGCGGCGGAGGAGCACAGGCGGAATATAGCTGAATATAGAAAATTTCTAGAGTCTTGTGATTATGTGAAGGTGAATAGTCATTGGCGTAAAATCCAAGATCGGCTAGAGGACGACGATAGATACTTGCGACTTGAAAAAATTGATCGCTTGCTAGTTTTTCAGGACTATATTCGGGACTTGGAGAAAGAAGAGGAGGAACAAAGAAGAATACAGAAGGATCGAGTCCGACGGGGTGAAAGGAAAAACCGTGATGCTTTTCGCAAGTTGCTTGAAGAACATGTTGCTACTGGAATTCTTACTGCTAAAACTCAATGGCGAGAATATTGCTTGAAGGTCAGGGATTTACCTCAATATCAAGCCGTTGCATCAAATACATTGGGTTCCACCCCGAAGGATTTGTTTGAGCTTGTTGCAGAGGATCTTGAGAAACAGTATCATGAAGACAAGACACTCATAAAAGATACAATTAAGTCAGGCAAGATAATTGTAGTGACTACATCAGTATTTGAGGAGTTTAAGGCTGCTGTGTTGGAAGATGTTGCATGCCAAACAATATCTGACATCAATTTAAAGCTTATATTTGAGGAGTTGTTAGAGAGAGCTAAAGAGAAGGAAGAGAAAGAAGCCAAGAAGCGCCAACGCCTTGCTGATGAGTTTACTAACCTGTTATACACATTCAAGGATATTACTACTTCCTCAAAATGGGAGGATTGCAAGTCACTTTTTGAGGAGACTCAAGAGTACAGGTCAATTGGGGACGAAAGCTATAGCAGAGAAATTTTTGAGGAATACATCACATACTTGAAGGAAAAAGCTAAAGAGAAGGAACGTAAGCGTGAAGAGGAGAAGGTCAAAAAGGAGAAAGAAAGGGAAGAGAAACGGAAGGAGAAGGAGAAAAAAGAAAAAGACCGAGAACGCGAAAAGGATAAGTCAAAGGAACGCCATAGGAAGGATGAAACCGATAGTGATAACCAAGACATGACTGAAGTCCATGGTTACAAAGAGGAGAAGAAAAAAGAAAAGGATAAGGAAAGGAAGCATCGGAAAAGGCATCAGAGCAGCTTAGATGACGTGGATTCTGAAAAGGAAGACAAGGAAGAATCTAAAAAATCACGAAGGCATGGCAGTGAACGCAAGAAGTCTAGGAAGCATGCAAACTCTCCTGAATCAGACACTGAAAACCGGCACAGACGACACAAGAGGGAGCACTGGGATGTATCTAGGAAAACTGGGGGGCATGAGGAACTTGAAGACGGAGAGCTCGGCGACGATGTTGAAAACTAA 3003 0.4329 MANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHLAPSSQPIPMPYIQTNRPMSSIPPHSQSVPPLSNHMPGLPVSGAAPHSSYTFTPSYGQQHDNANALAQYQHPPQMLAPPGGQPWLSSASQSVAPSTSVQPAGLQSSGATLTDAVTNATNQHSLSDWQEHTSGDGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAANQGMQSETSDTPNAAVSSIATSTATNAASLNPSLTSNGLASSPSSVTPIASTDSPQLVSGLFGTSVSQSTVTSSTTGVEPSSVGTTSAAPILVAGGSGLSENSPQLSKMPPIVENQASQDFASANGSSPQDIEEAKKALAEVGKNNVIPPEEKTNDDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQRRIQKDRVRRGERKNRDAFRKLLEEHVATGILTAKTQWREYCLKVRDLPQYQAVASNTLGSTPKDLFELVAEDLEKQYHEDKTLIKDTIKSGKIIVVTTSVFEEFKAAVLEDVACQTISDINLKLIFEELLERAKEKEEKEAKKRQRLADEFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKVKKEKEREEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMTEVHGYKEEKKKEKDKERKHRKRHQSSLDDVDSEKEDKEESKKSRRHGSERKKSRKHANSPESDTENRHRRHKREHWDVSRKTGGHEELEDGELGDDVEN* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0303 1000 Pfam FF domain 512 562 IPR002713 -
Pvu1g0303 1000 Pfam FF domain 654 708 IPR002713 -
Pvu1g0303 1000 Pfam FF domain 581 629 IPR002713 -
Pvu1g0303 1000 Pfam FF domain 790 837 IPR002713 -
Pvu1g0303 1000 Pfam FF domain 445 494 IPR002713 -
Pvu1g0303 1000 SUPERFAMILY WW domain 238 271 IPR036020 GO:0005515
Pvu1g0303 1000 SMART ww_5 234 266 IPR001202 GO:0005515
Pvu1g0303 1000 SMART ww_5 193 225 IPR001202 GO:0005515
Pvu1g0303 1000 SUPERFAMILY FF domain 645 720 IPR036517 -
Pvu1g0303 1000 MobiDBLite consensus disorder prediction 155 178 - -
Pvu1g0303 1000 Coils Coil 767 791 - -
Pvu1g0303 1000 MobiDBLite consensus disorder prediction 955 989 - -
Pvu1g0303 1000 ProSiteProfiles FF domain profile. 650 713 IPR002713 -
Pvu1g0303 1000 MobiDBLite consensus disorder prediction 273 293 - -
Pvu1g0303 1000 SUPERFAMILY FF domain 778 847 IPR036517 -
Pvu1g0303 1000 Coils Coil 838 887 - -
Pvu1g0303 1000 Coils Coil 559 588 - -
Pvu1g0303 1000 MobiDBLite consensus disorder prediction 144 178 - -
Pvu1g0303 1000 Coils Coil 626 646 - -
Pvu1g0303 1000 ProSiteProfiles WW/rsp5/WWP domain profile. 196 225 IPR001202 GO:0005515
Pvu1g0303 1000 ProSitePatterns WW/rsp5/WWP domain signature. 198 223 IPR001202 GO:0005515
Pvu1g0303 1000 MobiDBLite consensus disorder prediction 849 1000 - -
Pvu1g0303 1000 SUPERFAMILY WW domain 197 231 IPR036020 GO:0005515
Pvu1g0303 1000 Coils Coil 491 514 - -
Pvu1g0303 1000 Gene3D - 235 279 - -
Pvu1g0303 1000 Gene3D - 192 234 - -
Pvu1g0303 1000 ProSiteProfiles FF domain profile. 443 497 IPR002713 -
Pvu1g0303 1000 ProSiteProfiles FF domain profile. 578 632 IPR002713 -
Pvu1g0303 1000 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 4 995 - -
Pvu1g0303 1000 SMART FF_2 443 497 IPR002713 -
Pvu1g0303 1000 SMART FF_2 578 632 IPR002713 -
Pvu1g0303 1000 SMART FF_2 785 840 IPR002713 -
Pvu1g0303 1000 SMART FF_2 510 565 IPR002713 -
Pvu1g0303 1000 SMART FF_2 652 712 IPR002713 -
Pvu1g0303 1000 SUPERFAMILY FF domain 570 639 IPR036517 -
Pvu1g0303 1000 MobiDBLite consensus disorder prediction 310 329 - -
Pvu1g0303 1000 MobiDBLite consensus disorder prediction 922 946 - -
Pvu1g0303 1000 MobiDBLite consensus disorder prediction 849 915 - -
Pvu1g0303 1000 Gene3D FF domain 443 498 IPR036517 -
Pvu1g0303 1000 CDD WW 239 266 IPR001202 GO:0005515
Pvu1g0303 1000 Gene3D FF domain 780 853 IPR036517 -
Pvu1g0303 1000 ProSiteProfiles FF domain profile. 510 565 IPR002713 -
Pvu1g0303 1000 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 4 995 IPR039726 GO:0045292
Pvu1g0303 1000 MobiDBLite consensus disorder prediction 110 130 - -
Pvu1g0303 1000 SUPERFAMILY FF domain 435 497 IPR036517 -
Pvu1g0303 1000 Gene3D FF domain 643 724 IPR036517 -
Pvu1g0303 1000 Gene3D FF domain 499 573 IPR036517 -
Pvu1g0303 1000 Gene3D FF domain 574 642 IPR036517 -
Pvu1g0303 1000 MobiDBLite consensus disorder prediction 272 293 - -
Pvu1g0303 1000 Pfam WW domain 239 264 IPR001202 GO:0005515
Pvu1g0303 1000 Pfam WW domain 196 223 IPR001202 GO:0005515
Pvu1g0303 1000 ProSitePatterns WW/rsp5/WWP domain signature. 239 264 IPR001202 GO:0005515
Pvu1g0303 1000 CDD WW 196 225 IPR001202 GO:0005515
Pvu1g0303 1000 ProSiteProfiles WW/rsp5/WWP domain profile. 233 266 IPR001202 GO:0005515
Pvu1g0303 1000 SUPERFAMILY FF domain 504 572 IPR036517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0303 Pvu-Chr1 2748280 2762811 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0303 K12821 - gmx:100806019 1555.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0303 1 2748280 2762811 Pvu1g0303 1 2748280 2762811 ECH