Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1871 ATGACACAACCATCGGCGCCTCCGCCTCCTCCTCCGCCGCTCGCGCCACCGACACCGACAACTCCGCCGCCTCCTCAGCAGACCGAGAGCGTCCGCGTGCGCTGTGCCGGCTGCCGCATGATCCTCACAGTGGCGCCCGGCCTCACGGAGTTCGCCTGCCCTACCTGCCGAATGCCGCAGATGCTTCCGCCGGAGCTCATGCCTAGGGACCGTGCCGCCGCCGCAAATGCGCCTACACCGGCGCCTCCGACCTCCGCTCCGCCCTCGCAGCCTCCGCACGCGCCTGCGCACGGCATTGATCCCACTAAGATCCAGCTTCCCTGCGCTTCCTGTAAGGCCATCCTCAACGTGCCTCACGGCCTCGCGCGCTTCGCTTGCCCTCAGTGCAACGTTGACCTAGCCGTCGATGTCTCCAAGGTCAAGCAGTTCTTCCCCGCCGCTCCTCCGCTGGAAGAAGTTAACGAGGTTGCTGTTGAAGTGGAACGGGACGAGGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGGCCACCAAAAGTATCTATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCACCTGAGCCAATTTATGATCCAAAAATTAAAGATGATTTGGAGAGTTCAAAGACTTTGTCTTGCTTGCAAATTGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAACATCTCCCAAATGGAGCTAGGGCAGGATTCTTTATTGGAGACGGAGCTGGTGTTGGTAAAGGTCGAACAATTGCAGGATTAATTTGGGAGAATTGGCATCATGGAAGGAGGAAAGCTTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGACGCTAGAAGAGACTTGGATGATGTGGGTGCAACATGCATTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGATCAGGGAGGGAGTTGTTTTCTTGACGTACAATAGTCTCATAGCATCTTCTGAGAAAGGTCGTACTCGTCTCCAGCAGCTTGTACAGTGGTGTGGACCAGGGTTTGATGGTCTTGTAATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTCCCTGAAGCTGGTAGTCAGCCAACGCGAACTGGAGAGGCAGTGCTTGATATCCAGGACCGACTGCCTGAAGGTCGTGTTGTTTATTGCTCAGCAACTGGGGCATCTGAGCCTCGCAATCTGGGTTATATGGTTCGACTTGGTCTTTGGGGAGATGGGACGTCATTCTTAGATTTCCGTGAATTTCTAGGTGCTCTGGACAGAGGGGGTGTTGGAGCTCTTGAATTAGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTATGCCGGACGCTTAGCTATGAAGGTGCAGAGTTTGAAGTTATTGAAGCACCATTAGAAGAGAAAATGATGGAAATATATAAAAAGGCAGCAGAATTTTGGGCTGAATTACGAGTAGAATTGCTGTCAGCCAGTGCCTTCCTAAATGATAAACCTAATTCTAGTCAACTGTGGCGCTTATACTGGGCAAGCCATCAGCGTTTCTTTAGACACCTATGTATGTCTGCTAAAGTCCCTGCTGCTCTGAGACTAGCGAAGCAAGCATTAGTTCAAGACAAATGTGTAGTCATTGGTCTTCAGAGTACTGGAGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTACCCTTTACCAGAAAAACCTGAACTTCTCCCAGGAGAAGATGGGGTGAAAGAACTCCAAAGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAGTAAAAGGCAGGGTCAGAAAAGTGGCCAAGTGGCAACCTCCTAGTGATGCTGAAAGTGATGAAGAATCTGAAACTGACTCTGGTGTTGAATCTACTGATTCTGATGATGAGTTTCAAATATGTGAAATTTGTACTACTGAGGAGGAAAAGAAAAAAATGCTACAGTGTTCTTGCTGCGGTAAATTAGTCCATTCCACATGCTTGATGCCACCAATTGGGGATGTAGTTCCTGAAGAGTGGTCATGCCATTTGTGTAAGGAAAAAACAGATGAATATCTTCTAGCAAGACAGGCCTACATAGCTGAACTTCAAAAGAGGTATGATGCAGCCTTGGAACGCAAGACAAAAATATCAGAGATAATTCGGTCTTTGGATCTTCCAAATAATCCTTTGGATGATATTGTTGACCAGCTAGGAGGCCCTGACAAAGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGAGCTGCTACGGGCAAGGGTGTAACTTATCAGGCTCGTAACACAAAAGATGTCACCATGGAAATGGTTAACATGCATGAAAAGCAGCTCTTTATGGATGGTAAAAAGTCAGTTGCTATTATCTCTGAGGCAGGATCTGCTGGTGTTTCATTGCAGGCAGATAGACGAGCTGCTAACCAGAAAAGAAGGGTTCATTTAACCCTGGAACTTCCATGGAGTGCTGACCGGGCAATTCAACAGTTTGGAAGAACGCATCGATCAAATCAAGCTTCCGCACCAGAATACAGGATACTCTTTACAAATCTTGGTGGAGAACGAAGATTTGCATCAATTGTTGCCAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGTGACCGCAGGGCTGGACCTTCATTGAGTGCTTATAATTATGACAGTGCCTATGGAAAAAGGGCTCTAATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTGCCTGTGGTACCTCCGGGATGTTCATCTGACAAACCAGATACAATTCATGATTTTATTGTGCAAGCCAAAGCTGCTCTGGTATCTGTTGGAATAGTAAGGGACACGGTCCTTGGTAATGGTAAAGATCTTGGAAGATTATCTGGTCGCATTATTGATTCAGATATGCATGAAGTTGGGCGGTTCCTCAACAGGATTTTGGGACTACCTCCTGATATTCAGAATGGGCTATTTGAATTATTTGTGAGTATCCTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTTGACGCAGGCATTGTTGACTTGAAAGCTAATGTAATTGAATTACAAGGAACTCCAAAGACTGTTCATGTTGATCAATTGACTGGGGCCTCAACAGTTCTGTTTACATTCGTCTTGGATCGTGGGATCACATGGGAGTTGGCAAGTATGATGCTGAATGAAAAGCAGAAGGATGGACTTGGTTCAGCCAATGATGGCTTCTATGAGTCCAAGAGGGAGTGGTTGGGGAAACGTCATTTCATTTTAGCATTTGAAAGTTCTGCTTCGGGTACGTATAAAATAGTTCGACCCCCTGTTGGAGAATCAAACAGGGAGATGCCTCTGTCTGAATTAAAAAGTAAATATAGAAAAATTTCGACTTTAGAGAAGGCTCAGTCTGGTTGGGAAGAGGAATATGAAGTTTCATCCAAACAGTGCATGCATGGTCCCAATTGTAAGATTGGCAACTTTTGTACAGTTGGTAGAAGACTACAGGAAGTAAATGTCTTGGGTGGTCTCATCCTTCCTGTGTGGGGAGCCGTAGAAAAGGCCCTTTCAAAACAGGCCCGGCTAAGCCATAGGAGGTTACGCGTTGTACGCATTGAAACTACTGTGGACACCCAACGTATTGTTGGGCTTCTTGTTCCTAATGCAGCAGTGGAAACTGTGCTTCAAGGTTTAGCATGGGTTCAAGAAATTGATGATTGA 3798 0.4639 MTQPSAPPPPPPPLAPPTPTTPPPPQQTESVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMPRDRAAAANAPTPAPPTSAPPSQPPHAPAHGIDPTKIQLPCASCKAILNVPHGLARFACPQCNVDLAVDVSKVKQFFPAAPPLEEVNEVAVEVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPEPIYDPKIKDDLESSKTLSCLQIETLVYACQRHLQHLPNGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSKSVGIREGVVFLTYNSLIASSEKGRTRLQQLVQWCGPGFDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLDIQDRLPEGRVVYCSATGASEPRNLGYMVRLGLWGDGTSFLDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEEKMMEIYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHLCMSAKVPAALRLAKQALVQDKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEESETDSGVESTDSDDEFQICEICTTEEEKKKMLQCSCCGKLVHSTCLMPPIGDVVPEEWSCHLCKEKTDEYLLARQAYIAELQKRYDAALERKTKISEIIRSLDLPNNPLDDIVDQLGGPDKVAEMTGRRGMLVRAATGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKSVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMIMYKGIMEQDSLPVVPPGCSSDKPDTIHDFIVQAKAALVSVGIVRDTVLGNGKDLGRLSGRIIDSDMHEVGRFLNRILGLPPDIQNGLFELFVSILDLLVRNARIEGNLDAGIVDLKANVIELQGTPKTVHVDQLTGASTVLFTFVLDRGITWELASMMLNEKQKDGLGSANDGFYESKREWLGKRHFILAFESSASGTYKIVRPPVGESNREMPLSELKSKYRKISTLEKAQSGWEEEYEVSSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGAVEKALSKQARLSHRRLRVVRIETTVDTQRIVGLLVPNAAVETVLQGLAWVQEIDD* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1871 1265 Gene3D - 214 416 IPR027417 -
Pvu11g1871 1265 SUPERFAMILY FYVE/PHD zinc finger 657 716 IPR011011 -
Pvu11g1871 1265 Pfam C-terminal domain on Strawberry notch homologue 755 1044 IPR026937 -
Pvu11g1871 1265 MobiDBLite consensus disorder prediction 72 100 - -
Pvu11g1871 1265 PANTHER STRAWBERRY NOTCH-RELATED 29 1265 IPR026741 GO:0006355
Pvu11g1871 1265 ProSitePatterns Zinc finger PHD-type signature. 667 711 IPR019786 -
Pvu11g1871 1265 MobiDBLite consensus disorder prediction 644 660 - -
Pvu11g1871 1265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 723 IPR013083 -
Pvu11g1871 1265 MobiDBLite consensus disorder prediction 80 95 - -
Pvu11g1871 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 430 IPR027417 -
Pvu11g1871 1265 Pfam P-loop containing NTP hydrolase pore-1 187 487 IPR039187 -
Pvu11g1871 1265 MobiDBLite consensus disorder prediction 1 31 - -
Pvu11g1871 1265 MobiDBLite consensus disorder prediction 1 26 - -
Pvu11g1871 1265 MobiDBLite consensus disorder prediction 631 660 - -
Pvu11g1871 1265 SMART PHD_3 666 712 IPR001965 -
Pvu11g1871 1265 ProSiteProfiles Zinc finger PHD-type profile. 664 714 IPR019787 -
Pvu11g1871 1265 Pfam PHD-finger 666 714 IPR019787 -
Pvu11g1871 1265 Coils Coil 726 746 - -
Pvu11g1871 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 810 915 IPR027417 -
Pvu11g1871 1265 PANTHER OS08G0223700 PROTEIN 29 1265 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu11g1871 AAA_34 4.5e-131 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1871 11 45566114 45585874 Pvu11g1871 11 45566114 45585874 ECH