Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00394 ATGGGAAGAGCTCCCTGTTGTGACAAAGCCAACGTTAAGAGAGGACCATGGTCTCCAGAAGAAGATGCAACACTCAAAAGATATGTAGAGACTCATGGCACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGTCTACGGTGGCTCAATTATCTGAGGCCAGACATCAAACATGGAGGCTTTACCGAAGAAGAGGACAACATCATTTGCACCCTCTATGCTCAGATGGGAAGCAGGCAAGTTTTTTTTTCCAAATGGTTTCAATTTAATTAA 303 0.4488 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYAQMGSRQVFFSKWFQFN 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00394 100 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Pumo9g00394 100 CDD SANT 16 62 IPR001005 -
Pumo9g00394 100 Gene3D - 6 68 - -
Pumo9g00394 100 SMART sant 13 64 IPR001005 -
Pumo9g00394 100 SUPERFAMILY Homeodomain-like 15 90 IPR009057 -
Pumo9g00394 100 PANTHER OS09G0431300 PROTEIN 1 89 - -
Pumo9g00394 100 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo9g00394 100 FunFam Transcription factor RAX3 7 68 - -
Pumo9g00394 100 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00394 Pumo-Chr9 6350713 6351872 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00394 1 89 MYB Transcription Factor Family AT2G36890 84.270 1.36e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo9g00394 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00394 K09422 - vum:124825424 196.823