Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00392 ATGAAGAGGTTCTCTGCCTGCTGCTTCACAAGCAGAATCTCTAAGTTCCACTCTCACTGGAGGCATAACCAATCTCAGTCTCAGATCATGGCAGGAAACATCTCTGGTCCAAGTGGGAGCAAGGGTGCTAATATTTTATTTAATCATGACTTCTCTAGTGGGCTGAACTCTTGGCATCTCAATAACTGCACTGGCTATGTAATTTCAGCTGAATCAGGTACTCAAGGAGGAATTTCAGTGGAGTCAGATGTTAATTATGCTGTTATCACTGATCGAAAGGAATGCTGGCAAGGCCTTGAGCAAGACATCACAGACAGAATTTCCATTGGTTCCACTTACACAGTTTCAGCTTGTGTGGGAGTATCCGGGCTTTCTCAGGGATCTAGTGATGTTCTAGCTACACTGAAGCTAGAATATCATGATTCAGCTACTAGTTACTTGTTCATTGGAAGAACTTCTGTTAATAAAGATAGCTGGGAAAAGTTGGAAGGGACATTCTCATTGTCAACTATGCCTGATCGGGTTATATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACCTGCTCATACGATCGGTAGAGATAAATTGTTCCACTCCAAATAAAAATACCACAAGCACAGGATGTGTTTCAGCTGGAGATGACAACATCATAATTAACCCCCAATTTGATGATGGCCTGAATAACTGGTCTGGAAGAGGCTGCAAGATTATGTTGCATGATTCCATGAATAATGGGAAAATTGTTCCAAAGTCTGGGAAATTCTTTGCATCTGCAACAGAACGCACACAGAACTGGAATGGAATTCAGCAAGAGATTACTGGGTGTGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTTAGTTAGAATATTTGGAAACAACGTCTCTACTGCAGATGTACGGGCTACTTTGTGGGTTCAAACACCAGATCTTCGAGAGCAGTATATAGGCATTGCAAATGTGCAGGCAACAGATAAAGATTGGATAACAATGCAGGGAAAATTCCTTCTAAATGGCTCTCCATCAAAAGTGGTCCTTTATTTAGAGGGCCCCCCTCCAGGCACCGACATTCTTCTCGATAATTTGGTCTTAAAGCATGCAGCTAAAACACCTCCTTCAACCCCACCGGATGTAAAGAATGTTGCTTTTGGGGTTAATATAATTGAGAACAGCAATCTGGCTGATAGCACCAATGGATGGTTTCCCCTTGGCAATTGCACTTTAAGTGTTAAAACTGGTTCACCACATATAATTCCACCAATGGCAAGAGATTCTCTTGGTCCTCATGAGCTCCTAAGCGGGCGCTACATCCTTGTAACTAATCGAACACAAACATGGATGGGACCTGCTCAGATCATCACTGATAAAGTGAAACTCTTTGTGACTTATCAAGTTTCTGCTTGGGTCCGGATTGGCTCAGGATCAGCAGGGCCTCAGAATGTGAATGTTGCCCTTGGTGTTGACAACCAGTGGGTCAATGGAGGACAAACTGAGGTTTCTGATGATATGTGGCATGAAATTGGAGGGTCCTTTAGAATTGAAAAGCAGCCATCAAAGGTTATGGTTTATGTCCAAGGTCCTGCTTCTGGTGTGGACTTAATGGTTGCTGGACTCCAAATTTTTCCGGTGGATAGACACACAAGATTTAGATATTTAAAGATCCAAACTGATAAGATTCGTAAACGTGATGTTATCCTCAAATTCTCCGGGCTGGACTCTGGCAGCTATGCTAACACCTCAGTGCAAGTTAGACAAACACAGAATGATTTCCCAATTGGAACATGCATCAGCAGAACAAACATTGACAATGAGGACTTTGTTAACTTCCTTGTCAAGCATTTTAACTGGGCTGTGTTTGGAAATGAATTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTCAATTACAAGGATGCTGATGATCTGTTAAGCTTGTGTCAGAAGCACAAGATACAAACTCGCGGTCATTGTATCTTCTGGGAAGTGGATGAAACTGTTCAGCAGTGGATCAAGTCACTGAACAAAAACGATTTGATGGCGGTGGTCCAAAACCGCTTAAATGGCCTGCTGACTCGCTACAAGGGCAAGTTCAGTCACTATGATGTCAACAATGAAATGCTGCATGGTTCATTTTACCAAGACAGGCTAGGCAAGGATATAAGAGCAAACATGTTCAAGACTGCAAACCAACTAGACCCTTCTGCTACACTCTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACCAGATCATGTCCAGATAAGTACATCCATCACATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGGGGAATTGGAATTCAAGGCCACATAGATTGTCCAATAGGGCCTGTTGTTAGTTCTTCCCTTGACAAGTTGGGTATTCTTGGTCTACCTATATGGTTCACTGAGCTTGATGTGTCTTCCATCAATGATTATGTTAGAGCAGATGATCTTGAAGTTATGCTATGCGAAGCAATGGCTCATCCTGCGGTAGAAGGCATAATGCTGTGGGGATTTTGGGAGCTGTTTATGAGCAGGGACAATTCACACTTGGTGAATGCAGAAGGTGACATCAATGAGGCTGGGAAAAGGTTCTTAGCTCTAAAACAAGAGTGGCTCTCTCACAGCCGTGGCCATGTTGATGAACAAGGCCAATACAACTTGAGAGGCTTTCATGGAACATACAATGTGCAAGTTGTGACCCCAACAAAGAAAATTTCTAAGACATTTGTGGTTGACAAAGGTGACTCCCCACTAGTGGTATCTATTGATTTATAA 2793 0.4289 MKRFSACCFTSRISKFHSHWRHNQSQSQIMAGNISGPSGSKGANILFNHDFSSGLNSWHLNNCTGYVISAESGTQGGISVESDVNYAVITDRKECWQGLEQDITDRISIGSTYTVSACVGVSGLSQGSSDVLATLKLEYHDSATSYLFIGRTSVNKDSWEKLEGTFSLSTMPDRVIFYLEGPAPGVDLLIRSVEINCSTPNKNTTSTGCVSAGDDNIIINPQFDDGLNNWSGRGCKIMLHDSMNNGKIVPKSGKFFASATERTQNWNGIQQEITGCVQRKLAYEVTALVRIFGNNVSTADVRATLWVQTPDLREQYIGIANVQATDKDWITMQGKFLLNGSPSKVVLYLEGPPPGTDILLDNLVLKHAAKTPPSTPPDVKNVAFGVNIIENSNLADSTNGWFPLGNCTLSVKTGSPHIIPPMARDSLGPHELLSGRYILVTNRTQTWMGPAQIITDKVKLFVTYQVSAWVRIGSGSAGPQNVNVALGVDNQWVNGGQTEVSDDMWHEIGGSFRIEKQPSKVMVYVQGPASGVDLMVAGLQIFPVDRHTRFRYLKIQTDKIRKRDVILKFSGLDSGSYANTSVQVRQTQNDFPIGTCISRTNIDNEDFVNFLVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLLSLCQKHKIQTRGHCIFWEVDETVQQWIKSLNKNDLMAVVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHIDCPIGPVVSSSLDKLGILGLPIWFTELDVSSINDYVRADDLEVMLCEAMAHPAVEGIMLWGFWELFMSRDNSHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDEQGQYNLRGFHGTYNVQVVTPTKKISKTFVVDKGDSPLVVSIDL 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00392 930 PRINTS Glycosyl hydrolase family 10 signature 769 781 IPR001000 GO:0004553|GO:0005975
Pumo9g00392 930 PRINTS Glycosyl hydrolase family 10 signature 655 667 IPR001000 GO:0004553|GO:0005975
Pumo9g00392 930 PRINTS Glycosyl hydrolase family 10 signature 737 748 IPR001000 GO:0004553|GO:0005975
Pumo9g00392 930 Gene3D Glycosidases 576 885 - -
Pumo9g00392 930 SUPERFAMILY (Trans)glycosidases 578 881 IPR017853 -
Pumo9g00392 930 SUPERFAMILY Galactose-binding domain-like 42 197 IPR008979 -
Pumo9g00392 930 SMART glyco_10 624 874 IPR001000 GO:0004553|GO:0005975
Pumo9g00392 930 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 578 873 IPR001000 GO:0004553|GO:0005975
Pumo9g00392 930 Pfam Glycosyl hydrolase family 10 587 844 IPR001000 GO:0004553|GO:0005975
Pumo9g00392 930 FunFam Glycosyl hydrolase family 10 protein 211 367 - -
Pumo9g00392 930 PANTHER GLYCOSYL HYDROLASE 373 922 IPR044846 GO:0004553|GO:0005975
Pumo9g00392 930 Pfam Carbohydrate binding domain 215 352 IPR003305 GO:0016798
Pumo9g00392 930 Pfam Carbohydrate binding domain 387 530 IPR003305 GO:0016798
Pumo9g00392 930 Pfam Carbohydrate binding domain 43 184 IPR003305 GO:0016798
Pumo9g00392 930 SUPERFAMILY Galactose-binding domain-like 214 368 IPR008979 -
Pumo9g00392 930 Gene3D - 38 197 - -
Pumo9g00392 930 Gene3D - 383 542 - -
Pumo9g00392 930 Gene3D - 210 368 - -
Pumo9g00392 930 FunFam Endo-1,4-beta-xylanase A 579 881 - -
Pumo9g00392 930 SUPERFAMILY Galactose-binding domain-like 385 546 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00392 Pumo-Chr9 6323837 6330007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00392 1 930 Glycoside Hydrolase AT1G58370 66.596 0.0 1328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00392 - - gmx:100816678 1806.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00392 9 6323837 6330007 Pumo9g00392 9 6323837 6330007 ECH
Pumo9g00392 9 6323837 6330007 Pumo10g00282 10 3769850 3792825 PCT