Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00391 ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACAGGTCCAAGGCCAAATTTCTTGTACTCTTCAGCTAGTGGTGGAAACCATAACCAGCATCATAGCCACCACCACCACCACCATCACCAGTTTCCTATCAACACCTTTCATCTTCAATCGGGTGGATCAGATCATTGCTTTCAGTCTGATCAAGTGGCACAACAACACCCTTCTGTGAAATCCGAAGCCAGCACTTCTCAGCTTCACGCTCCGATTTTCCACTACCCTTTAATGAGAGGAAACCTTCACAACAACACTGCTTCCACTATGCATCATCATCATCATCCCCAGCAACAACAAGGAGGGAGCCCAACTAGCTCCACTAGTGAAGCTGAGGCCATAAAAGCCAAAATCATTGCTCACCCTCAGTACTCCAATCTTTTAGAAGCTTACATGGATTGTCAAAAGATAGGAGCTCCACCCGAAGTGGTGGCGCGTATGGTTGCGGCTAAGCAAGAGTTTGAGGCACGGCAACGATCTTCAGTTGGTTCAAGGGAAGCTTCAAAAGACCCTGAACTTGACCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATTCAAGAGGCAATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTGCGGATCTTCTCTGATGATAAATGTGAAGGTGCTGGTTCATCAGAAGAGGATCAAGACAATAGTGGAGGAGAGACAGAACTTCCCGAGATTGATCCCCGAGTAGAAGACCGTGAACTTAAAAACCACTTGCTGAGGAAGTACAGTGGTTACTTGAGTAGCCTTAAGCAAGAGCTCTCGAAGAAGAAAAAGAAAGGGAAACTGCCCAAAGATGCCAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAGTCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCATTGGAAGCCATCTGAAGACATGCAATTTATGGTGATGGATGGCCTGCATCCGCAGAGTGCAACTCTCTACATGGATGGTCACTACATGGCAGATGGTCACTACCGTCTAGGGCCATGA 1161 0.4531 MEEYTNNNHLSENTGPRPNFLYSSASGGNHNQHHSHHHHHHHQFPINTFHLQSGGSDHCFQSDQVAQQHPSVKSEASTSQLHAPIFHYPLMRGNLHNNTASTMHHHHHPQQQQGGSPTSSTSEAEAIKAKIIAHPQYSNLLEAYMDCQKIGAPPEVVARMVAAKQEFEARQRSSVGSREASKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSDDKCEGAGSSEEDQDNSGGETELPEIDPRVEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00391 386 ProSiteProfiles ELK domain profile. 268 288 IPR005539 GO:0003677
Pumo9g00391 386 Gene3D - 293 355 - -
Pumo9g00391 386 Pfam KNOX2 domain 180 226 IPR005541 GO:0003677|GO:0005634
Pumo9g00391 386 Pfam Homeobox KN domain 308 347 IPR008422 GO:0003677|GO:0006355
Pumo9g00391 386 SMART KNOX1_2 125 169 IPR005540 GO:0003677|GO:0005634
Pumo9g00391 386 CDD homeodomain 300 352 IPR001356 GO:0003677
Pumo9g00391 386 MobiDBLite consensus disorder prediction 95 124 - -
Pumo9g00391 386 SMART ELK_2 268 289 IPR005539 GO:0003677
Pumo9g00391 386 SMART KNOX2_2 176 227 IPR005541 GO:0003677|GO:0005634
Pumo9g00391 386 MobiDBLite consensus disorder prediction 1 43 - -
Pumo9g00391 386 SMART HOX_1 290 355 IPR001356 GO:0003677
Pumo9g00391 386 ProSitePatterns 'Homeobox' domain signature. 326 349 IPR017970 GO:0000981|GO:0006355
Pumo9g00391 386 MobiDBLite consensus disorder prediction 236 265 - -
Pumo9g00391 386 Pfam KNOX1 domain 126 168 IPR005540 GO:0003677|GO:0005634
Pumo9g00391 386 SUPERFAMILY Homeodomain-like 289 364 IPR009057 -
Pumo9g00391 386 FunFam Homeobox protein knotted-1-like 2 293 355 - -
Pumo9g00391 386 Pfam ELK domain 268 289 IPR005539 GO:0003677
Pumo9g00391 386 ProSiteProfiles 'Homeobox' domain profile. 288 351 IPR001356 GO:0003677
Pumo9g00391 386 MobiDBLite consensus disorder prediction 1 30 - -
Pumo9g00391 386 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 102 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00391 Pumo-Chr9 6261106 6267884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00391 56 386 Homeobox Transcription Factor Family AT4G08150 69.322 5.95e-155 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo9g00391 KNOX2 3.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00391 - - gmx:100800822 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00391 9 6261106 6267884 Pumo9g00391 9 6261106 6267884 ECH