Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00389 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGCCCATGGTCACCAGAAGAAGATGCTAAGCTCAAATCCTACATAGAAAAACATGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAAATAGGCCTTAAACGTTGTGGCAAGAGTTGCCGCCTTAGGTGGCTAAACTATCTTCGCCCTAATCTCAAGCACGGTGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTTTACGTCAGTATTGGAAGCAGGTGGTCGGTGATTGCAGCTCAATTGCCAGGAAGAACCGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTGGGGAAGCACCGAAGAGAGCCACGTAATAGAGGCAATTACAACAGTGTTAAGCAAGAAAGTAATGTTAATAGAGGGAGTAGTACTGATGGTGATTCTTCTTCCTTATCCTTGGTTCAGGAAAATAGTAGCACTACTCAACAACAACAACAACAACAACCATGTTGGCCACAGAATATTAATACTATGCCTGTGCTACCACTACCATTACCCTTGCCATACACAAACCAAGGTCCATCTTTCAACGACCAAGATTCTATCAAAAAACTCCTTATCAAACTCGGAGGAAGATTTTCAGGTGATTATTACCATCCTACCCTTGATGGGTTGAACCTTCAATTCTCATCAGATGGGCAACAAATTTATCAAGAACAAGTCCATGTTGGCTCTTCTTCTGCTTCTGCTTGCATTAGTGCCACTATTAACAACAACAACAATGAGGTACAATTTGCACAAACTGGTCAATACCATGAAGTTGATAACTTGTTGGTGCAAGGGCAAGGTGGTAATTTCACTCCATCATTTGAGGAAATGGTGTCTTCTTCCAATTATCCAGATGGGTTGGAGTTCTTGTATAATGAGGGCATGATCGACCATAAGATAATAGACTCTACAACTACTACCACCACAAACTGGGGTGAAACTATCACTCCCATTTATCATCATCATCATTCCCTTGCTTCAAATTATCAAGGTCAAGGTGTGAGGCAAGAATGTGCTTTGCAAGATTTTAGCTACCCCGGGGCACAATAA 1104 0.423 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYNSVKQESNVNRGSSTDGDSSSLSLVQENSSTTQQQQQQQPCWPQNINTMPVLPLPLPLPYTNQGPSFNDQDSIKKLLIKLGGRFSGDYYHPTLDGLNLQFSSDGQQIYQEQVHVGSSSASACISATINNNNNEVQFAQTGQYHEVDNLLVQGQGGNFTPSFEEMVSSSNYPDGLEFLYNEGMIDHKIIDSTTTTTTNWGETITPIYHHHHSLASNYQGQGVRQECALQDFSYPGAQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00389 367 CDD SANT 71 113 IPR001005 -
Pumo9g00389 367 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo9g00389 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pumo9g00389 367 FunFam Transcription factor MYB36 70 141 - -
Pumo9g00389 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo9g00389 367 CDD SANT 16 62 IPR001005 -
Pumo9g00389 367 PANTHER OS09G0431300 PROTEIN 1 277 - -
Pumo9g00389 367 FunFam Transcription factor RAX3 7 68 - -
Pumo9g00389 367 Gene3D - 70 145 - -
Pumo9g00389 367 Gene3D - 7 68 - -
Pumo9g00389 367 MobiDBLite consensus disorder prediction 131 177 - -
Pumo9g00389 367 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pumo9g00389 367 SMART sant 67 115 IPR001005 -
Pumo9g00389 367 SMART sant 13 64 IPR001005 -
Pumo9g00389 367 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pumo9g00389 367 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo9g00389 367 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo9g00389 367 MobiDBLite consensus disorder prediction 116 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00389 Pumo-Chr9 6174616 6176548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00389 1 210 MYB Transcription Factor Family AT3G49690 63.333 9.86e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g00389 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00389 K09422 - gmx:100800290 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00389 9 6174616 6176548 Pumo10g00286 10 3883191 3885200 PCT