Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00355 ATGGCGGTGTTGTTGTCGGAGGAGGATGAGCTCGACGAGGAGCCCGGCGAGGTCGTCGATTCGGCACCGCCGCAGAAGGTTGGCGAAGAGAGACAATTCAGTTATTTCAAGAAGAAGCTCCTCAAACATGGACACGGCTGGGAAACCCCCAACTTCGACGACGTCGTAACCGTTTACTGTGTTGGAACATTGCTCGATGGAACAACGGTTGATTCCACTAGGGAGAGGGATCAGCCTAGGACCTTCACTCTTGGCAGAGGTGACATTGCTGCTGGGTTGGACCGTGCGATTATCACTATGAAGAAAGGGGAGGTGGCATTGTTCACGTTGCCCGGAGGTGGTGGTGGTGGTGATGTTTCATGTGATTCCGACGACGACGACGAGGTTGTGCAGTTTGAGGTGGAACTCGTTTCGTGGATCACAGTGGTGGATGTGTGCAAAGATGGTGGAGTTCTCAAGAAGATTATGGAGAGGGGGACCGGGATTGAGCGCCCTGGTGATCTCGATGAAGTGCTTGTGAAGTATCAGGTGGTGCTTGATGATGGCACTGTTGTTGTGGAGACGCCGGAAGGAGGAGTTGAGTTTCACGTGAAGGATGGTCATCTTGTTCCTATATTGCCGAAAGTAATCATGACTATGACAAGGGGAGAGAAGGCTGAATTAATTGTCCAACCTCAGTATGCCTTTGGGGAGAAGGGGAGAGAAGCTGGCAGTGGGCTCTGTTCAATTCCTCCGAATTCAGTGCTGCGTGTTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCCAAGGTGATTAAAAAGATTTTGAAAGAAGGGGAGGGTGCTTTCACAGCCAATGAGGGTGCAAATGTTACTGTGAGCTTCACAGCTATGCTAGAAGATGGCACTGTATTTGAGAAAAGAGGAATTGGTGAAACACAACCCTTGGAATTCATAACTGATGAGGAACAAGTGATTACTGGTCTAGACCGAGCTGTAGCAACAATGAAGAAGGGTGAGAGGGCGATAATTAGCATAAATCCTGATTATGCATTTGGAAATGTTGAAGTGAGACGAGATCTTGCTATTGTGCCACCAGGCTCGAATGTAGTCTATGACGTTGAGATGATGGATTTTATTAAGGAGAAAGCACCATGGGAATTGAATAGTAAGGAGAAAATTGAGGTGGCTGGGAGGATGAAAGAAGAAGGAAATGTATTATTTAAAGGTGGCAATTATCAGCGAGCAGGGAAGAAATATGAAAAGGCAGCTGATTTTGTTGATGAAGATGGATCCTTTGGGGATGATGAGCAAAAGCAAGCTAAGACACTGAGAGTGTCATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTCCTGGAGCAATCAAGCTATGTTCACAGGTGCTTGATGTTGAATTTTGCAATGTGAAAGCTTTTTACAGACGAGCACAAGCATATATAGAAACTGGAGATTACCTTTTAGCAGATGTAGACATCAAGAAAGCTCTTGTGGTGGACCCACAAAACAGGGAGGTAAAGGTAATTCAGAAGAAATTGAAGCAACTTCAAGCTGACCGTGACAAAAAAGATGCTAAGCTATATGGAAACATGTTTGCACGTAAAACAAAGGACTCGTCTATGGCTCTAAAGAGATTGAAGATTGAGAAAGATGAGAGGGAAAATGAAGAGGTTGCAAGAATGGAAATTGACGAAGTTGCTGATAGCGCGCGCAGTGATTTAATAGTTGATTCTTGTTGA 1767 0.4533 MAVLLSEEDELDEEPGEVVDSAPPQKVGEERQFSYFKKKLLKHGHGWETPNFDDVVTVYCVGTLLDGTTVDSTRERDQPRTFTLGRGDIAAGLDRAIITMKKGEVALFTLPGGGGGGDVSCDSDDDDEVVQFEVELVSWITVVDVCKDGGVLKKIMERGTGIERPGDLDEVLVKYQVVLDDGTVVVETPEGGVEFHVKDGHLVPILPKVIMTMTRGEKAELIVQPQYAFGEKGREAGSGLCSIPPNSVLRVNIELVSFKPVINVTGDSKVIKKILKEGEGAFTANEGANVTVSFTAMLEDGTVFEKRGIGETQPLEFITDEEQVITGLDRAVATMKKGERAIISINPDYAFGNVEVRRDLAIVPPGSNVVYDVEMMDFIKEKAPWELNSKEKIEVAGRMKEEGNVLFKGGNYQRAGKKYEKAADFVDEDGSFGDDEQKQAKTLRVSCWLNGAACSLKLNDFPGAIKLCSQVLDVEFCNVKAFYRRAQAYIETGDYLLADVDIKKALVVDPQNREVKVIQKKLKQLQADRDKKDAKLYGNMFARKTKDSSMALKRLKIEKDERENEEVARMEIDEVADSARSDLIVDSC 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00355 588 Coils Coil 515 535 - -
Pumo9g00355 588 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 259 IPR001179 GO:0003755
Pumo9g00355 588 MobiDBLite consensus disorder prediction 1 17 - -
Pumo9g00355 588 FunFam Peptidylprolyl isomerase 143 259 - -
Pumo9g00355 588 SUPERFAMILY FKBP-like 144 259 - -
Pumo9g00355 588 SMART tpr_5 396 429 IPR019734 GO:0005515
Pumo9g00355 588 SMART tpr_5 479 512 IPR019734 GO:0005515
Pumo9g00355 588 SMART tpr_5 445 478 IPR019734 GO:0005515
Pumo9g00355 588 Gene3D Tetratricopeptide repeat domain 384 539 IPR011990 GO:0005515
Pumo9g00355 588 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 53 140 IPR001179 GO:0003755
Pumo9g00355 588 FunFam Peptidylprolyl isomerase 384 539 - -
Pumo9g00355 588 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 166 256 IPR001179 GO:0003755
Pumo9g00355 588 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 137 IPR001179 GO:0003755
Pumo9g00355 588 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 375 IPR001179 GO:0003755
Pumo9g00355 588 SUPERFAMILY FKBP-like 265 396 - -
Pumo9g00355 588 Gene3D - 27 141 IPR046357 GO:0003755
Pumo9g00355 588 SUPERFAMILY FKBP-like 11 141 - -
Pumo9g00355 588 Gene3D - 142 259 IPR046357 GO:0003755
Pumo9g00355 588 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Pumo9g00355 588 Gene3D - 260 383 IPR046357 GO:0003755
Pumo9g00355 588 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 287 379 IPR001179 GO:0003755
Pumo9g00355 588 PANTHER PEPTIDYLPROLYL ISOMERASE 141 260 - -
Pumo9g00355 588 FunFam Peptidylprolyl isomerase 260 381 - -
Pumo9g00355 588 MobiDBLite consensus disorder prediction 1 25 - -
Pumo9g00355 588 SUPERFAMILY TPR-like 390 541 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00355 Pumo-Chr9 5548077 5554925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00355 26 543 Calmodulin-binding Proteins AT3G25230 54.702 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00355 K09571 - gmx:100798382 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00355 9 5548077 5554925 Pumo9g00355 9 5548077 5554925 ECH