Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02882 ATGGTCATGGAAACAAGCAGAGTGAGAAAGAATGTTGGGATACTTCTCCTCTACCTGACTTTGGCTGCCATTTCTCTCACTCATTGTGATGCAGATAGATCAATGAGACTACTGAGAGGGCCTAAACATAGAAGAAATACAACCAGCAAGAGCCCAAAGAAGTTGAAAACGGTTAAGCATTTTGATGTGAATCCAACCATATTCTCATCAAATGTACAACCCTATAGTCTTAGCTCCCCATTTTCTTTACCCCCTTATGAATCACTTGCTCCAATCCCATTGCCAGAAAACAGCCCTCCATTTTGTGTGTTTCCACCACCAGGCACTCCTTCCACCACCATTCCTACCCCAACAGGATTTCAACCAAGCACACCATCACCTCCTGACTATGGCACCTCACCAATCTTTCCAGCCCCTCCAAGCCCAACAACCATCACACCAGGCCCACCAGACTCCTTCCCCACACCAACCCCAGATATTGTTCCAGGCCCACCCAGCATCACACCGGGCTCTCCCGAGCCCGTGCTCAACCCTCCCATCATTATTCCAAGCCCACCCGACTCCTCAATGGGCCCACCCAGTATCACACCGGGCTCACCCGAGCCTGTGCTCAACCCTCCCATCATTATTCCAAGCCCACCCGACTCCTCAATGGGCCCACCCTACTTTGAGCCCAGCCCACCTTACTTTGAGCCCACCCCACCATTCATAATCCCTTCCCCCACAGGTGGCATCACCCCAGGCCCACCAAGCACTGTTCCATCCCCCACTGAAGGCTCTGTCCCAAGCCCAACTGTGTTTCAGCCACCTGTGGTGTACCCTCCACCAAGTGTGCCACCACCACCCAACTATGCCCCTAGGGCCACCTTGTGGTGTGTGGCTAAGCCCTCTGTCCCAGACCCAATCATCCAAGAGGCCATGAACTATGCTTGCTGGTCAGGAGCAGATTGCACCTCCATTCAACCTAATGGGCCATGCTATGAGCCCAATACTGTGTATGCACATGCTTCATACGCTTTCAATAGTTATTGGCAAAGGACCAAAGGTGCTGGTGGCCATTGTGAATTTGGAGGGACAGCCATGCTGGTTGCAGTTGATCCTAGCTTCGATGGGTGCCACTTTCATCTACAACTGATCAATGGTTTTTTTTTTTTTTTGGCCCTTTAG 1167 0.5141 MVMETSRVRKNVGILLLYLTLAAISLTHCDADRSMRLLRGPKHRRNTTSKSPKKLKTVKHFDVNPTIFSSNVQPYSLSSPFSLPPYESLAPIPLPENSPPFCVFPPPGTPSTTIPTPTGFQPSTPSPPDYGTSPIFPAPPSPTTITPGPPDSFPTPTPDIVPGPPSITPGSPEPVLNPPIIIPSPPDSSMGPPSITPGSPEPVLNPPIIIPSPPDSSMGPPYFEPSPPYFEPTPPFIIPSPTGGITPGPPSTVPSPTEGSVPSPTVFQPPVVYPPPSVPPPPNYAPRATLWCVAKPSVPDPIIQEAMNYACWSGADCTSIQPNGPCYEPNTVYAHASYAFNSYWQRTKGAGGHCEFGGTAMLVAVDPSFDGCHFHLQLINGFFFFLAL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02882 388 Pfam X8 domain 290 361 IPR012946 -
Pumo4g02882 388 MobiDBLite consensus disorder prediction 106 199 - -
Pumo4g02882 388 FunFam Glucan endo-1,3-beta-glucosidase 4 285 378 - -
Pumo4g02882 388 Gene3D - 286 377 - -
Pumo4g02882 388 MobiDBLite consensus disorder prediction 120 199 - -
Pumo4g02882 388 SMART X8_cls 290 374 IPR012946 -
Pumo4g02882 388 PANTHER BETA-1,3 GLUCANASE 287 375 IPR044788 -
Pumo4g02882 388 PRINTS Proline rich extensin signature 125 137 - -
Pumo4g02882 388 PRINTS Proline rich extensin signature 138 159 - -
Pumo4g02882 388 PRINTS Proline rich extensin signature 83 95 - -
Pumo4g02882 388 PRINTS Proline rich extensin signature 103 119 - -
Pumo4g02882 388 PRINTS Proline rich extensin signature 172 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02882 Pumo-Chr4 55150055 55152451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02882 288 374 Glycoside Hydrolase AT3G13560 46.591 1.85e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02882 - - gmx:100794886 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02882 4 55150055 55152451 Pumo4g02882 4 55150055 55152451 ECH