Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo4g02830 | ATGGGCAACCTCTTTGGCAAAAATAAAAAGTGTCGCACTCAAAGTTCAAGCAATGATAATAAAGGAAGAGGTGGAAGAATCTACACTACCGTGACCAATAGAGGTTTACCACCCAATTTCCCAACTCAGTTACCTCAGTCACAGCCTCCACCACTATTGTATCCAACTCTGGAACCTCCGCCACTGCCACCGCCACCGCCACCGCCACCGCCACCGGCAGAACCACAATCCATGTTTAAGAAATCAAGTTTTGGGAGAGCTTACTCTAGCAAAGGCTCTTCAGTCATGAACAAAAAGCAATCTGCCAAGAAGTATGCTTTGATTCGTGATAACTTCTCCACCCTTGAACAGGTGACAACAGCCTTGAGGAAAGAAGGATTAGAATCATCAAATCTCATCCTTGGAATTGATTTTACAAAGAGCAATGAATGGACTGGCAGAATCTCATTCAATAAAAGAAGCCTGCATGCTATTGGAAGTACACCTAATCCTTATGAGAAGGCCATTTCTATTATTGGCAAGACTTTGGCTCCCTTTGATGATGATAACTTGATTCCATGCTTTGGCTTTGGTGATGCTACCACCCATGATCAAGAAGTGTTTAGCTTTCACAGTGATCATTCACCTTGCCATGGCTTTGAGGAAGTCTTGTCTTGCTACCAGAAAATAGTTCCAAACTTGAAACTTTCAGGGCCAACCTCTTATGCTCCGGTGATTGAGGCTGCTATAGACATAGTTGAGAAAAATCGTGGCCAATTCCATGTGTTACAAGAAGCTGTGGACACTGGAGATAAAGAACTCAGTCCTCAAGAAGAGAAGACAATTAAAGCAATCGTTGATGCAAGTGCATATCCCCTCGCTATAGTTCTGGTTGGAGTTGGTGATGGGCCTTGGGAAGACATGAGAAAGTTTGATGACAGGTTACCGGCACGTGATTATGACAATTTTCAGTTTGTTAATTTCACGGAGATCATGTCCAAAAACATAAGCCCCTCGGAGAAAGAAGCAGCTTTTGCTCTGGCTGCTCTCATGGAGATCCCCTTCCAATATAAAGCAACCATGGAATTTGGAATACTCGGACGTGTAACAGGAAGAGCAAAGAGAATAGTTCCAAAACCTCCTCCTGTTCCTTATTCTAGGCCTGCACCACCACCTGCGCGTGTACCCAGCAATACTGCAGCATCCTCCGGAGATGAGCAAAACCAAGCGGCCTGCGCTGTTTGTTTGACCAATCCAAGAGACTTGGCCTTTGGATGTGGGCACATGACTTGCAGGGATTGTGGATACAAGTTAACTAATTGTCCCATGTGCCGAGAGAGGATCACTAGTCGTCTCAGGGTGTACAGCGGGTGA | 1353 | 0.4508 | MGNLFGKNKKCRTQSSSNDNKGRGGRIYTTVTNRGLPPNFPTQLPQSQPPPLLYPTLEPPPLPPPPPPPPPPAEPQSMFKKSSFGRAYSSKGSSVMNKKQSAKKYALIRDNFSTLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNKRSLHAIGSTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLSCYQKIVPNLKLSGPTSYAPVIEAAIDIVEKNRGQFHVLQEAVDTGDKELSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMRKFDDRLPARDYDNFQFVNFTEIMSKNISPSEKEAAFALAALMEIPFQYKATMEFGILGRVTGRAKRIVPKPPPVPYSRPAPPPARVPSNTAASSGDEQNQAACAVCLTNPRDLAFGCGHMTCRDCGYKLTNCPMCRERITSRLRVYSG | 450 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo4g02830 | 450 | PANTHER | COPINE FAMILY PROTEIN 1 | 86 | 425 | - | - | |
| Pumo4g02830 | 450 | MobiDBLite | consensus disorder prediction | 8 | 41 | - | - | |
| Pumo4g02830 | 450 | MobiDBLite | consensus disorder prediction | 42 | 76 | - | - | |
| Pumo4g02830 | 450 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 391 | 449 | IPR013083 | - | |
| Pumo4g02830 | 450 | MobiDBLite | consensus disorder prediction | 370 | 388 | - | - | |
| Pumo4g02830 | 450 | MobiDBLite | consensus disorder prediction | 370 | 395 | - | - | |
| Pumo4g02830 | 450 | Pfam | Zinc finger, C3HC4 type (RING finger) | 403 | 443 | - | - | |
| Pumo4g02830 | 450 | SUPERFAMILY | RING/U-box | 398 | 444 | - | - | |
| Pumo4g02830 | 450 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 63 | 143 | - | - | |
| Pumo4g02830 | 450 | MobiDBLite | consensus disorder prediction | 1 | 95 | - | - | |
| Pumo4g02830 | 450 | SUPERFAMILY | vWA-like | 130 | 305 | IPR036465 | - | |
| Pumo4g02830 | 450 | Pfam | Copine | 154 | 358 | IPR010734 | - | |
| Pumo4g02830 | 450 | ProSiteProfiles | Zinc finger RING-type profile. | 405 | 438 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo4g02830 | Pumo-Chr4 | 52267185 | 52281360 | Proximal |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pumo4g02830 | 4 | 52267185 | 52281360 | Pumo4g02830 | 4 | 52267185 | 52281360 | ECH |