LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g00299	ATGAAGGGCATGAATGAGAGTAACACCGATGAAGGAAACAATCATAACAACTGGTTGGGGTTCTCTCTTTCACCCCACATGAAAATGGAGGTTACTTCAGCAGCCACTGTTCCGACAACCTTCTACATGTCCCCTTCTCACATGTCCAACTCCGGAATGTGTTACGGTGTCGGGGGAAATGGTAACTTCCACTCTCCTCTTACCGTTATGCCTCTCAAGTCTGATGGGTCACTTTGTATCTTTGAAGCTCTCAATAGATCACAAACGCAAGTGATGGTGCCAACTTCGTCTCCGAAATTGGAGGACTTCTTAGGTGGTGCAACTATGGGAACTCACGAATATGGAAGCCACGAGAGAGGCCTGAGCCTAGACAGCATCTATTACAACACCCAAAATGCAGAGGCTCAACCCAACAGAGACCTTCTCTCAGAACCCTTCAGGCAACAAGGGCATATGAATGTCCAAACACACCCTTATTATTCAGGACTTGCTTGCCATGGAATGTATCAGGCACCGTTGGAGGAAGAAACAACAAAGGAAACGCACGTTTCAGTTTGCAGCTCTTTAATGCCTCAGATGACAGAAGAAGGTTTCAAAAACTGGGTGGCTCCAAGGGAGTATTCAACTCATCAGCAGCAGGTTTTGGAGCAGCAAATGAACTGTGGCATGGGGAATGAGAGAAGTGGTGTGTCTTTAGGAACTGTGGGGTGTGGAGAGTTACAATCTCTAAGCTTAACTATGAGTCCTGGTTCTCAGTCTAGTTGTGTCACTGCTCCTTCTGGGACAGATTCTGTGGCTGTGGAAGCAAAGAAGAGAGGGCATGCTAAGTTGGGTCAGAAACAACCGGTGCATAGGAAATCTATTGACACATTTGGGCAAAGAACGTCGCAGTATAGGGGCGTGACAAGGCATAGATGGACTGGTAGGTATGAAGCGCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACTAGGAAAGGAAGACAAGTATATTTGGGGGGTTATGATATGGAAGAGAAAGCTGCAAGGGCCTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCGACGCATATTAACTTTTCGATAGAAAATTACCAAGTTGAACTTGAGGAAATGAAGAACATGAGCAGACAGGAATACGTTGCACATTTGAGAAGAAAAAGCAGCGGATTTTCAAGGGGTGCTTCAATATACAGAGGGGTCACAAGGCACCACCAACATGGTAGATGGCAAGCAAGGATAGGCAGAGTTGCCGGGAACAAGGACCTTTACCTAGGGACATTCAGCACACAAGAGGAAGCAGCAGAAGCATATGATGTAGCCGCAATCAAATTCCGCGGCGCGAATGCAGTCACAAACTTTGACATTTCAAGATACGATGTTGAGAGAATCATGGCCAGTAGCAATCTCCTCGCTGGGGAGCTTGCAAGGCGTAACAAAGATAACGATCCAAGAAACGAGGCCAGTGTAGTAGTAACAAGTGTTAACAATGAGGAAGCGGTTCAAGCGAGAAACAACAATGAAACCGATTCAGCGTGGAAGATGGTTCTGTTTAATCACCCTTCACAGGGAAATGGCAGTGACCAAAAAATAATGAACTGCGGAAATTACAGAAACAGTGCATTCTCTGTGGCCCTACAAGATCTCATTGGGATTGATTCGGTGGGTTCTGGGCTGGAGGAGTCTAGCAAAATTGGGACTCATTTTTCAAACCCGTCCTCGCTGGTGACCAGTTTAAGCAGCTCAAGAGAGGCTAGTCCTGAGAAAACGGGTCCCTCGCTTCTGTTTCCAAAGCCCCCAATGGAAACAAAGATTGTGACCCCATTGGTGGTACGAGTGTTACCTCTTGGTTGCCCTCACCAACGGTCCAAATGA	1881	0.4673	MKGMNESNTDEGNNHNNWLGFSLSPHMKMEVTSAATVPTTFYMSPSHMSNSGMCYGVGGNGNFHSPLTVMPLKSDGSLCIFEALNRSQTQVMVPTSSPKLEDFLGGATMGTHEYGSHERGLSLDSIYYNTQNAEAQPNRDLLSEPFRQQGHMNVQTHPYYSGLACHGMYQAPLEEETTKETHVSVCSSLMPQMTEEGFKNWVAPREYSTHQQQVLEQQMNCGMGNERSGVSLGTVGCGELQSLSLTMSPGSQSSCVTAPSGTDSVAVEAKKRGHAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFSIENYQVELEEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVERIMASSNLLAGELARRNKDNDPRNEASVVVTSVNNEEAVQARNNNETDSAWKMVLFNHPSQGNGSDQKIMNCGNYRNSAFSVALQDLIGIDSVGSGLEESSKIGTHFSNPSSLVTSLSSSREASPEKTGPSLLFPKPPMETKIVTPLVVRVLPLGCPHQRSK	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g00299	626	SUPERFAMILY	DNA-binding domain	296	365	IPR016177	GO:0003677
	Pumo10g00299	626	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	93	528	-	-
	Pumo10g00299	626	Pfam	AP2 domain	297	355	IPR001471	GO:0003700\|GO:0006355
	Pumo10g00299	626	Pfam	AP2 domain	399	449	IPR001471	GO:0003700\|GO:0006355
	Pumo10g00299	626	CDD	AP2	296	362	IPR001471	GO:0003700\|GO:0006355
	Pumo10g00299	626	ProSiteProfiles	AP2/ERF domain profile.	297	363	IPR001471	GO:0003700\|GO:0006355
	Pumo10g00299	626	FunFam	AP2-like ethylene-responsive transcription factor ANT	296	365	-	-
	Pumo10g00299	626	PRINTS	Ethylene responsive element binding protein signature	298	309	IPR001471	GO:0003700\|GO:0006355
	Pumo10g00299	626	PRINTS	Ethylene responsive element binding protein signature	439	459	IPR001471	GO:0003700\|GO:0006355
	Pumo10g00299	626	CDD	AP2	398	459	IPR001471	GO:0003700\|GO:0006355
	Pumo10g00299	626	SMART	rav1_2	297	369	IPR001471	GO:0003700\|GO:0006355
	Pumo10g00299	626	SMART	rav1_2	399	463	IPR001471	GO:0003700\|GO:0006355
	Pumo10g00299	626	SUPERFAMILY	DNA-binding domain	398	459	IPR016177	GO:0003677
	Pumo10g00299	626	MobiDBLite	consensus disorder prediction	566	590	-	-
	Pumo10g00299	626	FunFam	AP2-like ethylene-responsive transcription factor	398	459	-	-
	Pumo10g00299	626	Gene3D	AP2/ERF domain	399	459	IPR036955	GO:0003700\|GO:0006355
	Pumo10g00299	626	Gene3D	AP2/ERF domain	296	365	IPR036955	GO:0003700\|GO:0006355
	Pumo10g00299	626	ProSiteProfiles	AP2/ERF domain profile.	399	457	IPR001471	GO:0003700\|GO:0006355
	Pumo10g00299	626	MobiDBLite	consensus disorder prediction	566	600	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g00299	Pumo-Chr10	4067286	4070386	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g00299	238	505	AP2-EREBP Transcription Factor Family	AT4G37750	71.096	3.24e-143	426

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Pumo10g00299		AP2	1.4e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g00299	K09285		-	gmx:100787223	1113.98

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo10g00299	10	4067286	4070386	Pumo10g00299	10	4067286	4070386	ECH
	Pumo9g00377	9	5983560	5987337	Pumo10g00299	10	4067286	4070386	PCT