Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00286 ATGGGGAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCACCAGAAGAAGATGCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGAGGCAACTGGATCGCTTTGCCACAAAAGATTGGCCTTAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCTAACATCAAGCACGGTGGTTTCTCCGAAGAAGAAGACAACATCATTTGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTCATTGCAGCACAATTGCCAGGAAGAACTGATAATGACATAAAGAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTAGGGAAGCACCGTAAGGAACTACAGTCACGTAACAAAGGAAACGGTGTCGTCGTTAAGCATGAGAACAATTCCCCACTCTTGCTTCAGGAAAACAGTGCTCAACAACAACATCCATGTTGGCCACAGATTCCTGTGCTGCCACTTTCACCGTACACAAACCAAAGTCCAAGTTTCAACGACCAAGACTCTATTAGAAAGCTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATCAACCCATCCTTGATGGGTTGAATCTTCAGTTCCCACATGATTATTCTTCTCCCTCATCAACACAACAAATTCAACAAGAGCAAGTCCATGTTGGCTCTTCCGGGTGCATTAACACTATTGGCAACAACCAAGTACAATTTGGTCAAAGTAATGAGTACTGTGCTGAGTTAGTGCATGGACAAGGCAGTTTCACAGCATCAATTGGGGAAATGGTTTCTAGTAACGATTATTCTCAAAGGTTATTAAGTGGGTTGGAGTTCTTCTATGGGGAGGAAATGAATATTACGGATAAGGTAATGGGTGCATGTGCTTCTTCAAGTTGTGTACAAAGTACTAATTGGGGTGAAACCAGTTCTGTGATGTATCCTTCTCTCGTTGCTTCGAATTACGAGGGTGTGCAGCAAGAGATGCCACGAGATCAATGTGCTTTTCAAGAGTTGAGCTATCCGGGGGCACAATAG 1053 0.452 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKELQSRNKGNGVVVKHENNSPLLLQENSAQQQHPCWPQIPVLPLSPYTNQSPSFNDQDSIRKLLIKLGGRFSDDYQPILDGLNLQFPHDYSSPSSTQQIQQEQVHVGSSGCINTIGNNQVQFGQSNEYCAELVHGQGSFTASIGEMVSSNDYSQRLLSGLEFFYGEEMNITDKVMGACASSSCVQSTNWGETSSVMYPSLVASNYEGVQQEMPRDQCAFQELSYPGAQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00286 350 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo10g00286 350 Gene3D - 70 141 - -
Pumo10g00286 350 CDD SANT 71 113 IPR001005 -
Pumo10g00286 350 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo10g00286 350 PANTHER OS09G0431300 PROTEIN 1 258 - -
Pumo10g00286 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo10g00286 350 FunFam Transcription factor RAX3 7 68 - -
Pumo10g00286 350 SMART sant 13 64 IPR001005 -
Pumo10g00286 350 SMART sant 67 115 IPR001005 -
Pumo10g00286 350 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pumo10g00286 350 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo10g00286 350 CDD SANT 16 62 IPR001005 -
Pumo10g00286 350 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pumo10g00286 350 Gene3D - 7 68 - -
Pumo10g00286 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pumo10g00286 350 FunFam Transcription factor MYB36 70 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00286 Pumo-Chr10 3883191 3885200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00286 1 195 MYB Transcription Factor Family AT3G49690 63.636 5.71e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g00286 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00286 K09422 - gmx:778079 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00389 9 6174616 6176548 Pumo10g00286 10 3883191 3885200 PCT