Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00282 ATGAGGGAAGACTTTCAACAATTGATAATGGCAACAAACAAGGGATGCGTTTCCACTGAAGATGAAAGCATCGTAATAAACCCCCAGTTTGATGATGGCTTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGCATTACAAGAATCCATGGGAGAGGGGAAAATTCTTCCAAAGTCTGGTAAATTCTTTGCATCAGCAACAGAACGTACACAAAGCTGGAATGGAATTCAGCAAGAGATCACTGGAAGAGTGCAGCGCAAGCTTGCCTATGAGCTTACTGCTGTAGTTCGGATATTTGGAAACAATGCCACCACTTCTGATGTAAGGGCTACTTTGATGGTTCAAGGACCAGAACCAGATCTTCGGGAGCAGTATATAACCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAGTTCCTTCTAAATGGTTTCCCATTAACAGTAGTAGTTTATTTAGAAGGTCCCCCTCCAGACACTGACATTCTTGTCGATTCTTTGGTCATAAAACATGCAGCTAAAACACCACCTTCAACACCCCCGGATTATGAGGGTGCTGCTTTTGGTGTTAATATAATTGAAAACAGTAATCTGGATAATGGCACCAATGGATGGTTTCCCAATGGTAATTGTACTTTAAGCGTTGGAAGTGGTTCACCGCGTATAATTCCACCAATGGCAAGAGACTCTCTTGGGTCTCATGAATCCTTAAGTGGGCATTACATACTTATAACCAATCGCACACAGACATATATGGGTGCTGCTCAGATGATCACTGAGAAATTGAAACTTTTTCTAACTTATCAAGTATCTGCTTGGGTCCGGATTGGTTCTGGATCAACTGGGGCTCAGAATGTGAATGTTGCCCTTACTGTTGACGACAACCAATATGTCAACGGGGGACAAGTTGAGGTTGCTGATGACAGGTGGCACGAAATTGGTGGGTCTTTTAGAATTGAAAAGCAGCCATCTAAAGTTAAGGTTTCTATTCAAGGTCCTGATTCTGGTGTTGACTTAATGGTTGCTGGACTTCAAATTTTTGCTGTTGATAGACAAGCAAGGTTTAAATATTTAAGGAGACAGACAGACAAGATCCGTAAGCGTGATATTATCCTAAAATTCTCTGGGCTGGGCTCAAGCGGAAATCTTGGAACCTTGGTGAGAGTTAGACAAATACAAAACGATTTTCCCATTGGATCATGCATTTTTGGTAGAAGCAATATTGACAATGAAGATTTTGTTGACTTCTTTGTGAAACATTTTAATTGGGCTGTTTTTGGGAATGAGTTGAAGTGGTTTTATACTGAGCCACAACAAGGGATTTTCAATTACAAGGATGCTGATGAAATGTTAGACTTCTGTCAGAAGTACAAAATAGACACCCGGGGTCATTGTATCTTTTGGGAAGTGGAAAGCAATGTTCAGCAATGGGTCAAATCACTGAATAAAACTGATTTGATGATAGCTGTCCAAAACCGCTTAAATGGCTTATTGACTCGCTACAAGGGCAAGTTCAGGCACCATGATGTTAACAATGAAATGTTGCATGGTTCATTTTATCAGGATAGACTAGGTAAGGATATAAGGGCATACATGTTCAAGACCGCACACCAATTAGATCCATCTGCTACCCCATTTGTGAATGACTATCATGTTGAAGATGGATGTGACACCAAATCATCACCAGAAAAGTACATTGAACAAATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGGGGAATAGGAATTCAAGGTCACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCCCTTGAAAAAATGGGAACTCTTGGCATACCAATATGGTTTACTGAGCTTGATGTGTCTTCCACTAATGAATATGTGAGAGCTGATGATCTTGAAGTTATGCTGAGGGAAGCTTTGGCACACCCTGCCATAGATGGTGTAATGCTTTGGGGATTTTGGGAGTTGTCTATGAGCCGCGAAAATTCACACCTGGTGAATGCAGAAGGGGAACTCAACGAAGCTGGGAGAAGATTCCTTGCTCTCAAACAAGAGTGGTTGTCTCACAGCAGTGGTTATGTTGATGAGCAATGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTCGAAGTTGAGACCTTAACCAAGAAAGTTTGCAAGACATTCGTTGTTGACAAGGGTGACTCGTCACTGAGAGGAATTTGGATTAGAAAGTCCAAAGGAAAACTACATAACCACCACCACCACCGCGTGACCCATACTTCATATCCGCCACCCACCACCATCCCAAAACCACATTTGAAGGTGGTGTTCGACCACTCCGTAGGCGACACGGTCTGCTCAGAGTGCGACCTCGTCCTCGAGTCTCATTCCATCAACGAGACCTCTGAGTTGCACACCTTTGCCAACGAGTTTGGCGACAACGATCCCAACCACGTCGGCGGCCTCTCCACCGTCATCGCCAAGCCCAATAGCAACGACGACGAGTTCCTCTCCTCCTTCCTCTGCTGCTAG 2526 0.4339 MREDFQQLIMATNKGCVSTEDESIVINPQFDDGLNNWSGRGCKIALQESMGEGKILPKSGKFFASATERTQSWNGIQQEITGRVQRKLAYELTAVVRIFGNNATTSDVRATLMVQGPEPDLREQYITIANVQATDKDWVQMQGKFLLNGFPLTVVVYLEGPPPDTDILVDSLVIKHAAKTPPSTPPDYEGAAFGVNIIENSNLDNGTNGWFPNGNCTLSVGSGSPRIIPPMARDSLGSHESLSGHYILITNRTQTYMGAAQMITEKLKLFLTYQVSAWVRIGSGSTGAQNVNVALTVDDNQYVNGGQVEVADDRWHEIGGSFRIEKQPSKVKVSIQGPDSGVDLMVAGLQIFAVDRQARFKYLRRQTDKIRKRDIILKFSGLGSSGNLGTLVRVRQIQNDFPIGSCIFGRSNIDNEDFVDFFVKHFNWAVFGNELKWFYTEPQQGIFNYKDADEMLDFCQKYKIDTRGHCIFWEVESNVQQWVKSLNKTDLMIAVQNRLNGLLTRYKGKFRHHDVNNEMLHGSFYQDRLGKDIRAYMFKTAHQLDPSATPFVNDYHVEDGCDTKSSPEKYIEQILDLQEQGAPVGGIGIQGHIDSPVGPIVCSALEKMGTLGIPIWFTELDVSSTNEYVRADDLEVMLREALAHPAIDGVMLWGFWELSMSRENSHLVNAEGELNEAGRRFLALKQEWLSHSSGYVDEQWQFSFRGFSGTYNVEVETLTKKVCKTFVVDKGDSSLRGIWIRKSKGKLHNHHHHRVTHTSYPPPTTIPKPHLKVVFDHSVGDTVCSECDLVLESHSINETSELHTFANEFGDNDPNHVGGLSTVIAKPNSNDDEFLSSFLCC 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00282 841 Pfam Carbohydrate binding domain 196 340 IPR003305 GO:0016798
Pumo10g00282 841 Pfam Carbohydrate binding domain 23 163 IPR003305 GO:0016798
Pumo10g00282 841 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 612 622 IPR031158 -
Pumo10g00282 841 Pfam Glycosyl hydrolase family 10 397 655 IPR001000 GO:0004553|GO:0005975
Pumo10g00282 841 SUPERFAMILY Galactose-binding domain-like 194 355 IPR008979 -
Pumo10g00282 841 Gene3D - 768 838 - -
Pumo10g00282 841 FunFam Endo-1,4-beta-xylanase A 389 692 - -
Pumo10g00282 841 Gene3D - 191 353 - -
Pumo10g00282 841 Gene3D - 17 177 - -
Pumo10g00282 841 Gene3D Glycosidases 388 695 - -
Pumo10g00282 841 PANTHER GLYCOSYL HYDROLASE 182 733 IPR044846 GO:0004553|GO:0005975
Pumo10g00282 841 SUPERFAMILY (Trans)glycosidases 391 691 IPR017853 -
Pumo10g00282 841 SUPERFAMILY Galactose-binding domain-like 21 177 IPR008979 -
Pumo10g00282 841 Coils Coil 667 687 - -
Pumo10g00282 841 SMART glyco_10 435 685 IPR001000 GO:0004553|GO:0005975
Pumo10g00282 841 FunFam Glycosyl hydrolase family 10 protein 18 176 - -
Pumo10g00282 841 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 385 684 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00282 Pumo-Chr10 3769850 3792825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00282 17 734 Glycoside Hydrolase AT1G58370 71.944 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00282 - - gmx:100784250 1288.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00282 10 3769850 3792825 Pumo10g00282 10 3769850 3792825 ECH
Pumo9g00392 9 6323837 6330007 Pumo10g00282 10 3769850 3792825 PCT