Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01108 ATGATTGGGTTAAGTGAAGCTTGGTACTCTACAAATTCATTAACCAAGCGACCTAGGTACGAGAGTACAAGCCATTTGCCTATATACCCACAGAGGCCTGGGGAGAAGGATTGTGCTTACTATATGCAAACAAGAACATGTAAATTTGGAGAGAGCTGCAAGTTTGACCATCCTATTTGGGTTCCGGAAGGTGGAATTCCAGATTGGAAAGAGGTTCCTGTAATTACAAGTGATTCCTTTCCTGTGAGGCCTGGAGAACCAGATTGTCCTTACTTCATTAAAACCCAAACATGCAGGTTTGGTTCAAAATGCAAATTTAACCATCCAAGAGATAAAATGATTACTCCGGACGATTCTCAAATTGCATCTGTCTTACCGGAGCGGCCGTCTGAGCCCCCTTGTGCGTTTTACATGAAGACTGGTATATGTAAATTTGGTGCTTCCTGCAAATTCCACCACCCAAAAGATTTACAAATTCAGTTGGCTGGGCAAGCAAATGGCAGTGATGAACAAACTCAGTCAAATATTGTGAATGATGGAGTAACTGCAGGTGCTCAGCTGGTTTCACATCAAGCATCCAATGTGCCTGCGTCAATACTTAACAGCAAAGGACTTCCTATAAGACTGGGTGAAGTTGATTGTCCATTCTACTTGAAAACTGGAAGTTGCAAGTATGGCGCCACGTGTCGCTACAATCATCCTGATAGGACTGGTGGGAGCATTAACATCCGTTTATCCACAAAGACCTGGACAGACCGAATGTGA 765 0.434 MIGLSEAWYSTNSLTKRPRYESTSHLPIYPQRPGEKDCAYYMQTRTCKFGESCKFDHPIWVPEGGIPDWKEVPVITSDSFPVRPGEPDCPYFIKTQTCRFGSKCKFNHPRDKMITPDDSQIASVLPERPSEPPCAFYMKTGICKFGASCKFHHPKDLQIQLAGQANGSDEQTQSNIVNDGVTAGAQLVSHQASNVPASILNSKGLPIRLGEVDCPFYLKTGSCKYGATCRYNHPDRTGGSINIRLSTKTWTDRM* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01108 254 SUPERFAMILY CCCH zinc finger 131 156 IPR036855 GO:0046872
Pte1g01108 254 ProSiteProfiles Zinc finger C3H1-type profile. 208 236 IPR000571 GO:0046872
Pte1g01108 254 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Pte1g01108 254 SUPERFAMILY CCCH zinc finger 88 112 IPR036855 GO:0046872
Pte1g01108 254 PANTHER PROTEIN PHOSPHATASE RELATED 78 238 - -
Pte1g01108 254 SUPERFAMILY CCCH zinc finger 33 59 IPR036855 GO:0046872
Pte1g01108 254 SUPERFAMILY CCCH zinc finger 212 235 IPR036855 GO:0046872
Pte1g01108 254 SMART c3hfinal6 32 59 IPR000571 GO:0046872
Pte1g01108 254 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Pte1g01108 254 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Pte1g01108 254 SMART c3hfinal6 208 235 IPR000571 GO:0046872
Pte1g01108 254 Gene3D - 168 241 - -
Pte1g01108 254 Gene3D - 6 71 - -
Pte1g01108 254 ProSiteProfiles Zinc finger C3H1-type profile. 32 60 IPR000571 GO:0046872
Pte1g01108 254 Gene3D - 83 165 - -
Pte1g01108 254 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Pte1g01108 254 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 110 IPR000571 GO:0046872
Pte1g01108 254 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 211 234 IPR000571 GO:0046872
Pte1g01108 254 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 155 IPR000571 GO:0046872
Pte1g01108 254 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 34 58 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01108 Pte-Chr1 29800620 29809548 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01108 28 84 C2H2 Transcription Factor Family AT5G16540 40.000 2.98e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte1g01108 zf-CCCH 2.8e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01108 - - pop:7462129 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01108 1 29800620 29809548 Pte1g01108 1 29800620 29809548 RCT