Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00647 GTCAACAAACAAAGCCCCAACACGGAGCCATTACCGGTTTTCGACTATCTCTTTTTTTTCTTTCCTTTCTCTTCTTCTCTTCACTCACTCACCCCTCCGTACTACACATCATGTGACGTTTCGCTGGTTTCTACCCTCTCCTCGCTGTCCATGCCCCAAAATCTTGCAAGTGCAACCTTCTTTATCATAGTTTCCCTCACTTCACACACCACCTTAACTTTTGCTACCTCCTTGGACCCCAACACAAAAAACATCACACAAGTGCTGATGGTTGTGTGGCCCTTAGCGCTACTTACCACCATTCATTACCAATCTCTCTACTATTTTAGGGTTGAGGAACCCTTAGGGTTTTCTTGCTCTGCCTGTTGAAGCTCTTGTTCAGCTGGGTTAATTGGCTGAGTGAGAGACTTTTTTTGCTCCCCAATTTCTAAAATTAATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACAGGTCCAAGTCCAAGTCCAAGGCCAAATTTCTTGTACTCTTCTGCTAGTGGTGGAAACCTTAATCACCAACATCACCACCACCATCATCAGTTCCCAATCAACACCTTTCATCTCCAATCGGGTGGATCAGATCATTGCTTTCAGTCTGATCAAGTGGCACCACACCCTTCTGTGAAATCCGAAGCCAGCACTTCTCAGCTTCACGCTCCGATTTTCCACTACCCTTTAATGAGAGGAACCCTTCACAACAACACTCCCACTATGCATCACCACCATCCCCAGCAACAAGGAGGGAGCCCAACTAGCTCCACTTCCGAAGTTGAAGCCATAAAAGCCAAAATCATTGCTCACCCTCAGTACTCTAATCTTTTAGAAGCTTACATGGATTGTCAAAAGATAGGAGCTCCACCCGAAGTGGTGGCGCGTATGGTTGCTGCGAAGCAAGAATTTGAAGCACGGCAACGTTCCTCAGTTGGTTCAAGGGATACTTCTAAAGACCCTGAACTTGACCAATTCATGGAGGCTTATTATGACATGCTTGTGAAATATAGAGAGGAATTAACAAGGCCTATTCAAGAGGCCATGGATTTCATGCGAAGAATTGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTGCGGATCTTCTCTGATGATAAATGTGAAGGTGTTGGTTCATCAGAAGAGGATCAAGACAACAGTGGAGGAGAAACAGAACTCCCTGAGATTGATCCTCGAGCAGAAGACCGTGAACTTAAAAACCACTTGCTGAGGAAGTACAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGGAAATTGCCCAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAAAAGGTGGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCACTGGAAACCATCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCGCAGAGTGCAACTCTCTATATGGATGGTCACTATATGGCAGATGGTCACTATCGTCTAGGGCCATGACGTGACATCA 1598 0.4437 MEEYTNNNHLSENTGPSPSPRPNFLYSSASGGNLNHQHHHHHHQFPINTFHLQSGGSDHCFQSDQVAPHPSVKSEASTSQLHAPIFHYPLMRGTLHNNTPTMHHHHPQQQGGSPTSSTSEVEAIKAKIIAHPQYSNLLEAYMDCQKIGAPPEVVARMVAAKQEFEARQRSSVGSRDTSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00647 383 SMART HOX_1 287 352 IPR001356 GO:0003677
Pste8g00647 383 MobiDBLite consensus disorder prediction 94 121 - -
Pste8g00647 383 MobiDBLite consensus disorder prediction 1 34 - -
Pste8g00647 383 SMART KNOX2_2 173 224 IPR005541 GO:0003677|GO:0005634
Pste8g00647 383 Pfam KNOX1 domain 123 165 IPR005540 GO:0003677|GO:0005634
Pste8g00647 383 Pfam ELK domain 265 286 IPR005539 GO:0003677
Pste8g00647 383 SMART KNOX1_2 122 166 IPR005540 GO:0003677|GO:0005634
Pste8g00647 383 Pfam KNOX2 domain 177 223 IPR005541 GO:0003677|GO:0005634
Pste8g00647 383 CDD homeodomain 297 349 IPR001356 GO:0003677
Pste8g00647 383 ProSitePatterns 'Homeobox' domain signature. 323 346 IPR017970 GO:0000981|GO:0006355
Pste8g00647 383 Gene3D - 290 352 - -
Pste8g00647 383 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677
Pste8g00647 383 SMART ELK_2 265 286 IPR005539 GO:0003677
Pste8g00647 383 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677|GO:0006355
Pste8g00647 383 MobiDBLite consensus disorder prediction 1 43 - -
Pste8g00647 383 SUPERFAMILY Homeodomain-like 286 361 IPR009057 -
Pste8g00647 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 98 355 - -
Pste8g00647 383 ProSiteProfiles ELK domain profile. 265 285 IPR005539 GO:0003677
Pste8g00647 383 MobiDBLite consensus disorder prediction 234 262 - -
Pste8g00647 383 FunFam Homeobox protein knotted-1-like 2 290 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00647 Pste-Chr8 3372301 3377689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00647 57 383 Homeobox Transcription Factor Family AT4G08150 70.536 9.05e-158 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pste8g00647 KNOX2 2.7e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00647 8 3372301 3377689 Pste8g00647 8 3372301 3377689 ECH