LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g00643	CAAGAATACTTTTCTCTCATGAACTTGGAGCGGTTCCTAACAGATCAGAATCTCCTGAAACCATGAAGCCTCGTGTTTTTAACTCAACAGACCAATTCCATATACACAGTAAGATGATGTGTTTTTCACAGCTGCTCCACTTTGTAATCTCACGAAACCGCTGGTTTTTTGTTGAACCGAACAGGAGACACACAAACAACTAGTATTTTGATTTTGATTTACTAGATCATGGCAGGAAACGTCTCTGGTCCAAGTGGGAGCAAGGGTGCTAATATTTTACTCAATCATGATTTCTCTAGTGGGCTGAACTCTTGGCATCTCAATTGCTGCACTGGCTATGTAATTTCATCTCAAGCAAGTGCTCAAGGAGGAATTTCAATGGAGTCAGAAGTTAAATATGCTGTTATTACCGACAGAAAGGAATGCTGGCAAGGCCTTGAGCAAGACATCACAGACAGAATTTCCATTGGTTCCACTTACACTGTTTCCACCTGCGTGGGAGTATCCGGGCTTTCTCAGGGATCTAGTGATGTTCAAGCTACTCTGAAACTAGAATATCATGATTCTGCTACTAGTTACTTGTTCATTGGAAGAACTTCTGTTAATAAGGATAGCTGGGAAAAGTTGGAAGGGACATTCTCATTGTCAACTTTGCCTGATCGTGTTATATTTTATTTGGAAGGACCTGCTCCTGGAATTGACCTGCTTATGAGACCAGTCGAGATCTACTGTTCCATTCCAAATAATAGTACCACAAGCACAAGATGTGTTTCAACTGGAGATGACAACATCATAATTAACCCCCAATTTGTTGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTATGTTGCATGACTCCATGAATGATGGGAAAATTGTTCCAAAATCTGGGAAATTCTTTGCATCTGCAACAGAACGCACACAGAACTGGAATGGAATTCAGCAAGAGATCACTGGACGCGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTTAGTTAGAATATTTGGAAACAATGTCTCTACTTCTGATGTACGGGCTACTTTGTGGGTCCAAACACCAGATCTTCGAGAGCAGTATATAGGCATTGCAAATGTGCAGGCAACAGATAAAGATTGGATTACAATGCAGGGAAAATTCCTACTAAATGGTTCTCCGTCAAAAGTTGTCCTTTATTTAGAGGGCCCCCCTCCAGGCACTGACATTCTTCTCAATAATTTGGTTTTAAAGCATGCAGCTAAAACACCTCCTTCAACCCCTCCGGATGTTAAGAATGTTACTTATGGGGTTAATGTGATAGAGAACAGCAATCTGGCTGATGGTACCAACGGATGGTTTCCCCTTGGCAATTGCACTTTAAGTGTTAAAACTGGTTCACCACATATAATTCCACCAATGGCAAGGGATTCTCTTGGTCCTCATGAACTCCTAAGTGGGCGCTATATCCTTGTAACTAATCGAACACAAACATGGATGGGTCCTGCTCAGATCATCACCGATAAAGTGAAACTCTTTGTGACTTATCAAGTGTCTGCTTGGGTCCGGATTGGCTCAGGATCATCAGGGTCACAGAATGTGAATGTTGCCCTTGGTGTTGACAACCAGTGGGTCAATGGAGGTCAAACTGAGGTTTCTGATGACATGTGGCATGAAATTGGTGGTTCTTTTAGAATTGAAAAGCAGCCATCAAAGGTTATGGTTTATGTCCAAGGTCCTGCTTCTGGTGTGGACTTAATGGTTGCTGGACTTCAAATTTTTCCCGTGGATAGACACACAAGATTCAGATATTTAAAGATCCAAACTGATAAGATCCGTAAACGTGATGTTATCCTGAAATTCTCCGGGCTGGACTCTGGCAACTATGCTAACACTTCAGTGCAAGTTAGACAAACACAGAATGATTTTCCAATAGGAACATGCATCAGTAGAACAAACATTGACAATGAAGACTTTGTTAACTTCATTGTGAAGCATTTTAACTGGGCTGTGTTTGGAAACGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAGTTTAAATTACAAGGATGCTGATGATCTTTTAAGCTTGTGTCTGAAGCACAACATACAAACACGTGGCCATTGTATCTTCTGGGAAGTGGATGGAGTTGTTCAGCAATGGGTCAAGTCACTGAACAACAATGATTTGATGACAGCAGTTCAAAACCGCTTAAACGGCCTGCTGACTCGCTACAAGGGCAAGTTCAGTCACTATGATGTCAACAATGAAATGCTGCACGGTTCATTTTTCCAAGATAGGCTAGGCAAGGATATAAGGGCAAACATGTTTAAAACTGCAAACCAACTAGACCCTTCTGCTACACTCTTTGTGAATGATTATCACGTGGAAGATGGATGTGACACTAGATCATGTCCAGATAAGTACATCCATCATATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGGGGAATTGGAATTCAAGGCCACATAGATAGTCCAATAGGGCCTATAGTATGTTCTTCCCTTGACAAGTTGAGTATTATTGGTCTACCAATATGGTTTACTGAGCTTGATGTGTCTTCCATCAATGAATATGTTAGAGCAGATGATCTTGAAGTTATGCTACGTGAAGCTATGGCTCATCCTGCGGTAGAAGGCATAATGCTGTGGGGGTTTTGGGAGCTGTTTATGAGTAGAGACAATTCACACTTGGTGAATGCAGAAGGTGATATCAATGAGGCTGGGAAAAGGTTCTTAACTCTGAAACAAGAGTGGTTGTCTCACAGCCATGGCCATATTGATGAGCAAGGCCAATACAACTTCAGAGGCTTTCATGGAACATATAATGTGCAAGTTGTGGCCCCATCAAAGAAAATTTCTAAGACATTTGTGCTTGACAAAGGTGACTCACCACTAGTGGTATCCATCGATTTATAAGCATGCTGTTTCATCCAAGAACTAATATGGTGTATTTTTAATATCCTTGGGTTGGCCGAAACATTATGTTGGTGGTGTAATGTTATCTAAAATAGTTGGGATTGGAGTTGTCTACACTCTACACCATTGCTCAAAATCTCAACACTCAATATTTGTTCTACTTTATTATAAATATACTTGTAAGAATTGAAAAATAAATAAAGAGTGATAAAAAGTGTTTGAAC	3158	0.4113	MAGNVSGPSGSKGANILLNHDFSSGLNSWHLNCCTGYVISSQASAQGGISMESEVKYAVITDRKECWQGLEQDITDRISIGSTYTVSTCVGVSGLSQGSSDVQATLKLEYHDSATSYLFIGRTSVNKDSWEKLEGTFSLSTLPDRVIFYLEGPAPGIDLLMRPVEIYCSIPNNSTTSTRCVSTGDDNIIINPQFVDGLNNWSGRGCKIMLHDSMNDGKIVPKSGKFFASATERTQNWNGIQQEITGRVQRKLAYEVTALVRIFGNNVSTSDVRATLWVQTPDLREQYIGIANVQATDKDWITMQGKFLLNGSPSKVVLYLEGPPPGTDILLNNLVLKHAAKTPPSTPPDVKNVTYGVNVIENSNLADGTNGWFPLGNCTLSVKTGSPHIIPPMARDSLGPHELLSGRYILVTNRTQTWMGPAQIITDKVKLFVTYQVSAWVRIGSGSSGSQNVNVALGVDNQWVNGGQTEVSDDMWHEIGGSFRIEKQPSKVMVYVQGPASGVDLMVAGLQIFPVDRHTRFRYLKIQTDKIRKRDVILKFSGLDSGNYANTSVQVRQTQNDFPIGTCISRTNIDNEDFVNFIVKHFNWAVFGNELKWYWTEPQQGSLNYKDADDLLSLCLKHNIQTRGHCIFWEVDGVVQQWVKSLNNNDLMTAVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFFQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHIDSPIGPIVCSSLDKLSIIGLPIWFTELDVSSINEYVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNSHLVNAEGDINEAGKRFLTLKQEWLSHSHGHIDEQGQYNFRGFHGTYNVQVVAPSKKISKTFVLDKGDSPLVVSIDL	901

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g00643	901	FunFam	Glycosyl hydrolase family 10 protein	182	338	-	-
	Pste8g00643	901	Pfam	Carbohydrate binding domain	186	323	IPR003305	GO:0016798
	Pste8g00643	901	Pfam	Carbohydrate binding domain	358	501	IPR003305	GO:0016798
	Pste8g00643	901	Pfam	Carbohydrate binding domain	14	155	IPR003305	GO:0016798
	Pste8g00643	901	ProSiteProfiles	Glycosyl hydrolases family 10 (GH10) domain profile.	549	844	IPR001000	GO:0004553\|GO:0005975
	Pste8g00643	901	SUPERFAMILY	Galactose-binding domain-like	185	339	IPR008979	-
	Pste8g00643	901	SUPERFAMILY	Galactose-binding domain-like	13	168	IPR008979	-
	Pste8g00643	901	Gene3D	Glycosidases	547	855	-	-
	Pste8g00643	901	PANTHER	GLYCOSYL HYDROLASE	343	893	IPR044846	GO:0004553\|GO:0005975
	Pste8g00643	901	SMART	glyco_10	595	845	IPR001000	GO:0004553\|GO:0005975
	Pste8g00643	901	SUPERFAMILY	Galactose-binding domain-like	355	517	IPR008979	-
	Pste8g00643	901	Gene3D	-	9	167	-	-
	Pste8g00643	901	Gene3D	-	181	339	-	-
	Pste8g00643	901	Gene3D	-	354	513	-	-
	Pste8g00643	901	FunFam	Endo-1,4-beta-xylanase A	550	852	-	-
	Pste8g00643	901	SUPERFAMILY	(Trans)glycosidases	549	852	IPR017853	-
	Pste8g00643	901	Pfam	Glycosyl hydrolase family 10	558	815	IPR001000	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g00643	Pste-Chr8	3307750	3314557	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g00643	4	901	Glycoside Hydrolase	AT1G58370	68.479	0.0	1315

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste8g00643	8	3307750	3314557	Pste8g00643	8	3307750	3314557	ECH