Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00343 ATGGAAAACCACATCTACGCCTCTTCCTACAGCCCTTCCTCCAACTTCCGATTCCGCGACCCCTCCGACACCGCCATGTTCCTCTCCCACCACCACCACCGCGATTCCGCCGCCGCGCTCCGCTTCCCCTCCGCCGCCGTTGTCGACGCCGACATTGCGCCGCCAGCGTCACCTCCCGCATCGCCTCCTCCGCCGCCGCCGCCAACTTCCTCTCCGCCTGGCCCCCCGCCGCCGCCGCCGCCGACCTCAAACGCTCCTCCGACGGTTGGTTTTTCGCGCTTCTCCCCGCTTTTGTTTACTTTCGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATATGACTATATATCCGCAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAAGCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGGGGAATCCCGGATTGGAAAGAGGTTCCAAATATTGTTACAAATGAAACTCCTCCAGAGAGACCTGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAAAGATGCAAGTTTGGTACAAAGTGCAAATTTAATCATCCCAAGGTTTCCTCTGAAAATGCTGATATTTCATCTGGCTTACCTGAGAGGCCATCAGAGCCCCCTTGCGCGTTCTACTTGAAAACTGGAAAATGTAAATTTGGTGCTGCTTGTAAATTCCATCATCCCAAGGATATCCAGATTCAGTTGTCTGACGATTTGAGCCATACTGTTTCCCAGACGCTAATAAATTCTATGATGGGAGGGGTAACAGTAGATACACAGCCAATTAAATCGGTTATATCTCCATCGTTGCAAAATAGCAAAGGTCTTCCTGTAAGATTGGGGGAAGTAGATTGTCCGTTCTACATGAAAACTGGGAGTTGCAAGTATGGGAGCTCTTGCCGCTACAATCATCCTGACAGGAATGCAATTCATCCACCCATTTCTGGATTAGGCCCTTCCATTTTGCCATCCTCAGCTGCGAATCTGAATATTGGACTTCTTAATCCAGCTGTGTCTGTTTATCAGGCTTTTGACCCAAGGCTGTCGAATCCAATGTCTCAGATGGGAATTGCAGAAGCTATCTATCCTCAGCGACCTGGGCAGATTGAATGTGATTATTATATGAAAACCGGCGAGTGTAAATTTGGGGAAAAATGCAAGTACCATCACCCAATTGACCGCTCAGCGCCATCATTGTCAAAGCAGGGCACTGTTAAACTAACTCCTGCAGGATTACCAAGAAGAGAGGATGCTGTTATCTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCAGGAGAAGTTATGGAAATGGCAAAATCTCAAGGAGCATCTGCCAATGGAGGGGAAGTAGAAGGTGATGAAAACGAGAGTTCTGCTCAGGAATAG 1482 0.4865 MENHIYASSYSPSSNFRFRDPSDTAMFLSHHHHRDSAAALRFPSAAVVDADIAPPASPPASPPPPPPPTSSPPGPPPPPPPTSNAPPTVGFSRFSPLLFTFEAWYSTNSLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRSCKFGDSCKFDHPIWVPEGGIPDWKEVPNIVTNETPPERPGEPDCPYFLKTQRCKFGTKCKFNHPKVSSENADISSGLPERPSEPPCAFYLKTGKCKFGAACKFHHPKDIQIQLSDDLSHTVSQTLINSMMGGVTVDTQPIKSVISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGSSCRYNHPDRNAIHPPISGLGPSILPSSAANLNIGLLNPAVSVYQAFDPRLSNPMSQMGIAEAIYPQRPGQIECDYYMKTGECKFGEKCKYHHPIDRSAPSLSKQGTVKLTPAGLPRREDAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGASANGGEVEGDENESSAQE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00343 493 ProSiteProfiles Zinc finger C3H1-type profile. 180 208 IPR000571 GO:0046872
Pste1g00343 493 SUPERFAMILY Formin homology 2 domain (FH2 domain) 63 170 - -
Pste1g00343 493 SUPERFAMILY CCCH zinc finger 387 413 IPR036855 GO:0046872
Pste1g00343 493 MobiDBLite consensus disorder prediction 467 493 - -
Pste1g00343 493 Gene3D - 383 477 - -
Pste1g00343 493 FunFam zinc finger CCCH domain-containing protein 37 383 476 - -
Pste1g00343 493 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Pste1g00343 493 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Pste1g00343 493 SUPERFAMILY CCCH zinc finger 303 327 IPR036855 GO:0046872
Pste1g00343 493 Gene3D - 218 335 - -
Pste1g00343 493 PANTHER PROTEIN PHOSPHATASE RELATED 286 471 - -
Pste1g00343 493 MobiDBLite consensus disorder prediction 55 86 - -
Pste1g00343 493 SUPERFAMILY CCCH zinc finger 128 155 IPR036855 GO:0046872
Pste1g00343 493 SUPERFAMILY CCCH zinc finger 226 250 IPR036855 GO:0046872
Pste1g00343 493 Gene3D - 103 166 - -
Pste1g00343 493 Gene3D - 167 214 - -
Pste1g00343 493 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Pste1g00343 493 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872
Pste1g00343 493 MobiDBLite consensus disorder prediction 51 89 - -
Pste1g00343 493 SUPERFAMILY CCCH zinc finger 185 206 IPR036855 GO:0046872
Pste1g00343 493 ProSiteProfiles Zinc finger C3H1-type profile. 435 463 IPR000571 GO:0046872
Pste1g00343 493 SMART c3hfinal6 435 462 IPR000571 GO:0046872
Pste1g00343 493 SMART c3hfinal6 180 207 IPR000571 GO:0046872
Pste1g00343 493 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Pste1g00343 493 SMART c3hfinal6 385 412 IPR000571 GO:0046872
Pste1g00343 493 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Pste1g00343 493 SMART c3hfinal6 222 249 IPR000571 GO:0046872
Pste1g00343 493 FunFam Zinc finger CCCH domain-containing protein 37 165 213 - -
Pste1g00343 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 207 IPR000571 GO:0046872
Pste1g00343 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 154 IPR000571 GO:0046872
Pste1g00343 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 249 IPR000571 GO:0046872
Pste1g00343 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 388 411 IPR000571 GO:0046872
Pste1g00343 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 325 IPR000571 GO:0046872
Pste1g00343 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 439 462 IPR000571 GO:0046872
Pste1g00343 493 SUPERFAMILY CCCH zinc finger 438 462 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00343 Pste-Chr1 1230119 1240229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00343 297 477 C2H2 Transcription Factor Family AT3G02830 36.464 4.80e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste1g00343 zf-CCCH 1.4e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00343 1 1230119 1240229 Pste1g00343 1 1230119 1240229 ECH