Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0365 ATGGGAAATTTGTTAGGTAAAAATAAAAAGCATGAGTCTGAGAAACAGCATTCTAGGAATGATAAAGAAAGAGGTGGAAGAATCTCTTCTCTTAATTTTCAAACTCAAAATCAAAAACCTATTCCATTACCACTTCCACCACAAGTTGCTTCTTCTATGTCTAGGAAATCAAGTTTTGGGAAACAAAATTCTGGACAAAGTTCAAATACTAAGAAACCTACCAAGAAATATGCTTTCATTCCAGATAACTTCACTACCCTTGAACAGGTCATTGCGGCCCTTAGGAAAGAAGGTTTAGAGTCATCAAATCTCATCCTTGGAATTGATTTCACAAAGAGTAATGAATGGACTGGTAAAGTCTCATTCAATAATAGAAGCCTACATGCAATTGGAGAGACACCTAACCCTTATGAGAAAGCCATAACAATTATTGGCAAGACTTTAGCTCCCTTTGATGATGACAACTTGATTCCATGCTTTGGTTTTGGTGATGCTACTACACATGATCAACAAGTATTCAGCTTTCATAGTGATCATTCACCTTGCCATGGTTTTGAGGAAGTTTTGGATTGCTACAAAAAAGTTGTTCCAAACTTGAAACTCTCAGGACCAACTTCTTATGCTCCTGTCATTGAGGCTGCAATGGACATAGTTGAGAAAAGTCATGGCCAATTTCATGTCTTGGTTATCATTGCAGATGGCCAGGTTACAAGAAGCGTAGATACTAATGATTATGAACTAAGCCCTCAAGAAGAGAAGACAATCAAAGCAATTGCTAATGCAAGTGCATATCCGCTTGCTATAGTTCTGGTTGGAGTTGGCGATGGACCATGGGAAGACATGCAAAAGTTCGACGACAAGATTCCAGCTCGCGATTTTGATAACTTTCAGTTTGTTAATTTCACGATGATCATGTCTAAAAACACAAGCCCTGCCGAGAAAGAAGCAGCTTTTGCTCTGGCCGCTCTCATGGAGATCCCTTTCCAATACAAAGCATGCATCGAATTTCAAAAACTTGGGCGCGTAACAGGAAGAGCAATGAGAATAATTCCAAAAACTCCTCCTGTTGTTTATTCTCGTCCTGCACCAAACATTCCGACAGCATCAACAACAACATCAACAACAACAACAACAGATGAACAAAATCAATCTGCCTGTCCTGTTTGTTTGACCGATGCAAGAGATTTGGCGTTTGGATGTGGGCACATGACTTGCAGAGATTGTGCATCAAAGTTAAGTCATTGTCCAATATGTAGAGTCAGGATCACTAGTCGTCTTAGAGTATACACTGGTTGA 1296 0.3943 MGNLLGKNKKHESEKQHSRNDKERGGRISSLNFQTQNQKPIPLPLPPQVASSMSRKSSFGKQNSGQSSNTKKPTKKYAFIPDNFTTLEQVIAALRKEGLESSNLILGIDFTKSNEWTGKVSFNNRSLHAIGETPNPYEKAITIIGKTLAPFDDDNLIPCFGFGDATTHDQQVFSFHSDHSPCHGFEEVLDCYKKVVPNLKLSGPTSYAPVIEAAMDIVEKSHGQFHVLVIIADGQVTRSVDTNDYELSPQEEKTIKAIANASAYPLAIVLVGVGDGPWEDMQKFDDKIPARDFDNFQFVNFTMIMSKNTSPAEKEAAFALAALMEIPFQYKACIEFQKLGRVTGRAMRIIPKTPPVVYSRPAPNIPTASTTTSTTTTTDEQNQSACPVCLTDARDLAFGCGHMTCRDCASKLSHCPICRVRITSRLRVYTG* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0365 431 PANTHER COPINE FAMILY PROTEIN 1 1 430 - -
Psa1g0365 431 MobiDBLite consensus disorder prediction 1 75 - -
Psa1g0365 431 ProSiteProfiles Zinc finger RING-type profile. 386 419 IPR001841 -
Psa1g0365 431 Pfam Zinc finger, C3HC4 type (RING finger) 383 424 - -
Psa1g0365 431 SMART ring_2 386 418 IPR001841 -
Psa1g0365 431 SUPERFAMILY RING/U-box 378 425 - -
Psa1g0365 431 SUPERFAMILY vWA-like 102 284 IPR036465 -
Psa1g0365 431 Pfam Copine 126 340 IPR010734 -
Psa1g0365 431 MobiDBLite consensus disorder prediction 7 26 - -
Psa1g0365 431 SMART VWA_4 101 304 IPR002035 -
Psa1g0365 431 CDD RING-HC_RGLG_plant 386 429 IPR045317 GO:0061630|GO:0070534
Psa1g0365 431 PANTHER UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED 1 430 - -
Psa1g0365 431 MobiDBLite consensus disorder prediction 50 74 - -
Psa1g0365 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 430 IPR013083 -
Psa1g0365 431 Gene3D von Willebrand factor, type A domain 100 313 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0365 Psa-Chr1 21947923 21951847 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0365 1 21947923 21951847 Psa1g0365 1 21947923 21951847 ECH
Psa1g0365 1 21947923 21951847 Psa4g3304 4 280276580 280285001 PCT