Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2780 ATGAACACAGGCATCCAGTGTCCCGCACAGAAGCATTTACAAATGATGCAGCTTCCTTCGCGCCTGATAAAGTCCCTTTCATTTTCTTCATTACCAGCTACGCCTACCCTTCAAGACATTGCTTACCAGCAACCAAAAGGTATTGCAAAGGTTGTACTGAAAAAGGGTAAGTCACAGCTCTTTAAGGATGGAAATCCAATGGTTTACAGTGGAGCTGTTGATAGAATAATTGGAAGACCGCCTCCTAAGACTGGAGATATTGTTCTGGTGGCTGATGGCACTGAGAAGCCAATTGGGTGGGGCATGTACAATTCAGCTTCTATGTTCTGTGTTCGGCTCATGCAGTTTGAAGATGAAGCTACTAGTGACCCATCGTGTGCTTTGAACATCAAGAAATTGCTTGAAACAAGAATAGCTTCAGCCATTGAATTGCGTGAAAGGTTGGGTCTTCCTTCAGCACAGACAAACGCATATCGTCTAATTAATAGTGAAGGGGATAGATTATCAGGATTGATCATCGACATCTTTGGAGATGTAGCTGTAATAGCATCATCTGCTGCTTGGGTTGAGAAGTACAGAGCAGAGATAGAGGCATGCATCTGTAAAATTGATGGTATCAATCACATAAATTGGCGACCATCTCTTGATCTTAAGGAAGAAGGCATGGATGTGTCCAATTTGAAGGAAATTCATTCATCTACCAGTCCTGAAAGGTCAAAGATTATGGAAAACGGAATTTCATATGCAATTTCTCTCCAGGGTCAGAAGACAGGATTTTATGCAGATCAGCGTGAGAACCGCCACTTTGTATCAAGAATTTCAGGTGGACAGAAGGTTCTTGATATTTGCTGCTATAGTGGTGGTTTTGCTCTAAATGCCATACGTGGAGGTGCTGTGAGTGTTACTGGTGTTGACACATCACTGGCGGCTTTGGAGCTTGCTAAAGAAAATGTTGTACTTAACAATATGGATCCTGAAAGCATATCATTTTTGAGAGAAGATGCAACGGCATTTATGAAGAGTGCTCTCTCAAGAAATGAATCATGGGATATTATCATCATTGATCCTCCTAAACTAGCACCATCAAAGAAGGTTCTGCATAGTGCATCAGGCATGTACAGAAATATGAACTCATTGGCTATGAAACTAACAAAAAGAGGCGGCCTTCTAATGACTTGTTCTTGTTCAGGAGCTGTAGCCCAAAGTGGAATATTTTTGCGGATTCTTCAGGGCGCAGCATCCATGGCAGAGAGAAAAATCACTGTTCTAAGACAGGCTGGAGCAGCTTGTGATCATCCTGTGGACCCATCTTACCCAGAAGGTGCATACCTTTCCAACATCCTACTACGAGTACTGTGA 1359 0.4253 MNTGIQCPAQKHLQMMQLPSRLIKSLSFSSLPATPTLQDIAYQQPKGIAKVVLKKGKSQLFKDGNPMVYSGAVDRIIGRPPPKTGDIVLVADGTEKPIGWGMYNSASMFCVRLMQFEDEATSDPSCALNIKKLLETRIASAIELRERLGLPSAQTNAYRLINSEGDRLSGLIIDIFGDVAVIASSAAWVEKYRAEIEACICKIDGINHINWRPSLDXLKEEGMDVSNLKEIHSSTSPERSKIMENGISYAISLQGQKTGFYADQRENRHFVSRISGGQKVLDICCYSGGFALNAIRGGAVSVTGVDTSLAALELAKENVVLNNMDPESISFLREDATAFMKSALSRNESWDIIIIDPPKLAPSKKVLHSASGMYRNMNSLAMKLTKRGGLLMTCSCSGAVAQSGIFLRILQGAASMAERKITVLRQAGAACDHPVDPSYPEGAYLSNILLRVL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2780 453 SMART pua_5 49 143 IPR002478 GO:0003723
Prci6g2780 453 CDD AdoMet_MTases 279 394 - -
Prci6g2780 453 CDD PUA_RlmI 49 119 IPR041532 GO:0003723
Prci6g2780 453 Pfam S-adenosylmethionine-dependent methyltransferase 232 409 IPR019614 GO:0008168
Prci6g2780 453 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 36 452 - -
Prci6g2780 453 Gene3D PUA domain 48 119 IPR036974 GO:0003723
Prci6g2780 453 SUPERFAMILY PUA domain-like 50 118 IPR015947 -
Prci6g2780 453 CDD RlmI_M_like 133 227 - -
Prci6g2780 453 Pfam PUA-like domain 51 115 IPR041532 GO:0003723
Prci6g2780 453 Gene3D RNA methyltransferase domain (HRMD) like 130 234 - -
Prci6g2780 453 Gene3D Vaccinia Virus protein VP39 240 453 IPR029063 -
Prci6g2780 453 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 136 448 IPR029063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2780 - - pop:7481605 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g2780 6 40463893 40468748 Prci6g2780 6 40463893 40468748 ECH