Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1304 ATGTTGTGTGCTTGTTCCGGGGAGCAATTCAAATTCGAAGACCCGCCACAGTCACCGGAGTCCCTCGCAACAAGAGATTTCTCGGCCAGTGGACTCTCTTCGAGGACTGGGGATTGGGAATCTAAATTTGATGACACCCAAGTAGACGAAGCTGAATCTACTCTTAAAGAAGCTCTCTCCTTGAACTACGAGGAAGCTAGGGCTTTGTTGGGGAGGCTTGAGTTCCAAAGAGGGAATTTCGATGCTGCTCTTCAGGTATTTCAGGGGATTGACACTAAAGGTTTGACCCCAAGGATGATTAGGGCCATTTCTGAGAGAACCAGGCAAAGAAAACAACGTTCTAAGGCCGATCACTTGCTTCCCTCTATAATGTCAATGCATTCAGTGAGCCTTCTTCTTGAGGCTATTCTTCTTAAAGCTAAATCATTGGAGGCACTCGGACGTTACACCGAAGCCGCAAAGGAGTGCAAAATAATTCTGGACACGGTTGATTCTGCGCTACCAGCTGGAATGCCTCAAGGTTTTGGCGAAGATTGTAAACTGCAAGACATGTTTCACAGAGCATTGGAGTTACTTCCAAAACTTTGGACCAATGCAGGCTTGCTAGATGAAGCTATCACTGCTTATCGGCGGGCTCTGATCAAGCCTTGGAATTTGGGGCCGCAAAGGCTGGCCACCATGCAAAAAGATTTAGCTGTCACACTCCTTTATGGTGGTGTTGAAATAAGCCTTCCCTCTCATTTGCATGTGTGGGGTGTAACAACGCCGAAGACTAACATTGAAGAAGCTTCCCTGTTGTTGCTAGTACTTATGAGAAAGATAGCACTTCAGGAAATCGAATGGGATTCCGAACTATTAGATCATCTTGCATTTGCACTTTCAGTTACTGGGATGTTTGAATCATTGGCAGATCACATGGAGCAGATCCTTCGAGGTGTCTATAGCCGTGCTGAGAGGTGGTACTTTCTTGCCCTTTGTTATAGTGCTGCAGGACAGAATGAAACAGCATTGAACCTTCTAATGAAAGTTTGTGGTAGTTCTGAAGCAAAACATAGACCCCATTTTCCTTCCTTTTTATTTGGAGCAAAACTGTGTTCCCAAGATCCCAACCATGCGTATGAAGGCATTAAATTATCACGGACAGTGATTCATCTAGCCAAGCATCAATGTGAGCATTTTCAGGGTCAAGGTCACAGATTTCTTGGTGTTTGTTACGGGGCTGCAGCTAGAATTTCTGTCCTGGATTCTGAAAGAGTTATATGCCAAAGAGAGTCTTTGAATTCTTTAAACCAAGCTGCTTCAATTGGAAATAGCGACCCAGAAGTGTTATTCAGCCTTGGATTGGAAAATGCAGTTCAAAGAAATCTGATGGCAGCTTATGAGAATGCAGTGATGTACTCAGATTTGATCGTTGGCAGCTCAGGAAGAGGTTGGCAACTGTTAGCACTCATAGTATCTGCACAGCAACGGTTTAAGGATGCTGAGACTCTGGTTGATTTTGCTTTAGATGAATCTGGAAGGATGGATCAGTTACAACTTTTAAGATTGAAAGCCGTGCTTCAAATTGCTCAGCAGCAACCTAAACAAGCAATAGAGACCTACAGAATCTTGCTTGCACTAATTCAAGCAAGAAAGGATTTTTGGCTTGAATACAAAAACATCGATCCAGCAAACACGTTGAGACATGAGGAATCAACAGAAAAAAAATTGGAAATGGAAGCCTGGCAGGATTTGGCAACCATTTATGCCGATCTAGGTGCCTTGCTTGATGCAAAAACTTGTGTAGACAAAGCCCAGTTGATAGAATTCTTTTCTCCCAGAAGTTGGCATATCACAGGGACATTGTTTGAAGCTAAATCATTGTACAAGGAGGCCATTGTCTCTTTCACAATTGCATTATCGATAGAACCAGATTATGTTCCCAGCATCATTTCAACTGCAGAATTGTTTTTGAAAGCTGGTATGCAATCGCTTCCAATCGCAAGAAGCTTTTTAATGAACGCTCTGCGTTTGGAACCCACAAACCATGATGCGTGGTTCAACCTTGGATTGATTTCAAAAATGGAGGGTTCATTGCAGCAAGCAGCAGATTTCTTCCAAGCTGCATATGAGCTGAAGCTTTCAGCGCCAGTTGAAAGATTTGTGGGAGTAATTGACACTTCGAGATGA 2169 0.4343 MLCACSGEQFKFEDPPQSPESLATRDFSASGLSSRTGDWESKFDDTQVDEAESTLKEALSLNYEEARALLGRLEFQRGNFDAALQVFQGIDTKGLTPRMIRAISERTRQRKQRSKADHLLPSIMSMHSVSLLLEAILLKAKSLEALGRYTEAAKECKIILDTVDSALPAGMPQGFGEDCKLQDMFHRALELLPKLWTNAGLLDEAITAYRRALIKPWNLGPQRLATMQKDLAVTLLYGGVEISLPSHLHVWGVTTPKTNIEEASLLLLVLMRKIALQEIEWDSELLDHLAFALSVTGMFESLADHMEQILRGVYSRAERWYFLALCYSAAGQNETALNLLMKVCGSSEAKHRPHFPSFLFGAKLCSQDPNHAYEGIKLSRTVIHLAKHQCEHFQGQGHRFLGVCYGAAARISVLDSERVICQRESLNSLNQAASIGNSDPEVLFSLGLENAVQRNLMAAYENAVMYSDLIVGSSGRGWQLLALIVSAQQRFKDAETLVDFALDESGRMDQLQLLRLKAVLQIAQQQPKQAIETYRILLALIQARKDFWLEYKNIDPANTLRHEESTEKKLEMEAWQDLATIYADLGALLDAKTCVDKAQLIEFFSPRSWHITGTLFEAKSLYKEAIVSFTIALSIEPDYVPSIISTAELFLKAGMQSLPIARSFLMNALRLEPTNHDAWFNLGLISKMEGSLQQAADFFQAAYELKLSAPVERFVGVIDTSR 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1304 722 Gene3D Tetratricopeptide repeat domain 658 712 IPR011990 GO:0005515
Prci2g1304 722 MobiDBLite consensus disorder prediction 11 41 - -
Prci2g1304 722 MobiDBLite consensus disorder prediction 21 37 - -
Prci2g1304 722 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Prci2g1304 722 SUPERFAMILY TPR-like 571 706 IPR011990 GO:0005515
Prci2g1304 722 Gene3D Tetratricopeptide repeat domain 551 657 IPR011990 GO:0005515
Prci2g1304 722 SUPERFAMILY TPR-like 46 339 IPR011990 GO:0005515
Prci2g1304 722 SUPERFAMILY TPR-like 314 555 IPR011990 GO:0005515
Prci2g1304 722 Gene3D Tetratricopeptide repeat domain 268 548 IPR011990 GO:0005515
Prci2g1304 722 Pfam Tetratricopeptide repeat 46 89 - -
Prci2g1304 722 Gene3D Tetratricopeptide repeat domain 32 239 IPR011990 GO:0005515
Prci2g1304 722 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Prci2g1304 722 SMART tpr_5 511 544 IPR019734 GO:0005515
Prci2g1304 722 SMART tpr_5 572 605 IPR019734 GO:0005515
Prci2g1304 722 SMART tpr_5 676 709 IPR019734 GO:0005515
Prci2g1304 722 SMART tpr_5 317 350 IPR019734 GO:0005515
Prci2g1304 722 SMART tpr_5 133 166 IPR019734 GO:0005515
Prci2g1304 722 SMART tpr_5 606 639 IPR019734 GO:0005515
Prci2g1304 722 SMART tpr_5 475 508 IPR019734 GO:0005515
Prci2g1304 722 PANTHER PROTEIN NPG1 1 714 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1304 Prci-Chr2 9790463 9794549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1304 1 715 Calmodulin-binding Proteins AT1G27460 59.527 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1304 K21843 - gmx:100780807 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1304 2 9790463 9794549 Prci2g1304 2 9790463 9794549 ECH