Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1272 ATGGGTGGCCATGAAAATGCTATGGGGTTTCAACACGGGCAAGGGACAATCCTGAATTGCACGTCATCGGGCTTGAGCAGCAATGTTTCTGAAATCGCAATTAGCTCTGTGTCTATGGCCAAGCCTCCCGTTGTGACTAATCCCTTTCTTGGGTCGTCTTCTTCCACCTGGGATCCCCTTGTTTCCTTGAATCAGACTCAAACTTTTGGAGGCTCTTCCATGGTTTCTCACAGCGAGTTTGGCAGTTCATCTTACCCTCTCGTGTTGGAAAATCAGGGATTGAGTAGCGCCTCTCACCTAGTTCAATATATGTCCGACACTAATTTCGCTGTTCCTTCCTATGCAAGTGGAAGCTTTTCCGAAATGGTTGGCTCTTTCCCCACACCTGGGTGTTCTGATTTAGCCAATACGAGTTATGGCCCAGGTTATAACCCAAACGAAGAGGCAGCCATGAAAAGGGTTCCGCTAAATGCTTCACAATCTCAGCTTGAGGATCCAACTCCTGAAGAAGGAGCCACAGGATCTGCACCAAATGGAAGTAGAAGAAAGCGAGGACTTGATCACAATACCACGTTCAGTCCAAATAAGAACGCTGAAGGTGAACCGATGAGGGATTCTTCTGGGAAGAGCTCTGATGGTGTAAAAGAACACGATGAGAAGAAACAAAAGGTTGAGCAAGATAATACTAGTGCAGATTTGCGTGGTAAGCAATCATCAAAGCAAGCTAAAGACAACTCTCAAAGTGGAGAAGCTCCTAAAGAAAATTTCATTCATGTGAGGGCTCGTAGAGGTCAAGCCACAAACAGTCACAGCCTTGCCGAAAGGGTAAGAAGAGAGAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGGAAAGCAGTGATGCTGGATGAGATTATTAACTATGTGCAATCGCTGCAGCAACAGGTTGAGTTTTTGTCAATGAAACTTGCCACCGTGAACCCAGAACTGAATTTTGATGTAGAGCGGGTGCTATCCAAAGATATTCTTCAGTCGCGCATTGCGAATGGAACAATTGGTGGATATGGCATGAACTCCTCTCACTCATTCCCCAGTGGAAGTTTTCAGGGAACTCTTCCAGGCATACCCAACACATCACCATTCCCTCCTTTGCCCCAGAGTGTTTTGGAGCATGAGTTTCAAAGCTTGTATGGAATGGGATACGATTCCAGCGCAGCTCTTGAAAACGCAGGACCCAACGGGAGGTTGAAAACAGAGTTGTAA 1272 0.4615 MGGHENAMGFQHGQGTILNCTSSGLSSNVSEIAISSVSMAKPPVVTNPFLGSSSSTWDPLVSLNQTQTFGGSSMVSHSEFGSSSYPLVLENQGLSSASHLVQYMSDTNFAVPSYASGSFSEMVGSFPTPGCSDLANTSYGPGYNPNEEAAMKRVPLNASQSQLEDPTPEEGATGSAPNGSRRKRGLDHNTTFSPNKNAEGEPMRDSSGKSSDGVKEHDEKKQKVEQDNTSADLRGKQSSKQAKDNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERVLSKDILQSRIANGTIGGYGMNSSHSFPSGSFQGTLPGIPNTSPFPPLPQSVLEHEFQSLYGMGYDSSAALENAGPNGRLKTEL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1272 423 Gene3D - 262 336 IPR036638 GO:0046983
Prci2g1272 423 FunFam Basic helix-loop-helix transcription factor 262 334 - -
Prci2g1272 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 333 IPR036638 GO:0046983
Prci2g1272 423 SMART finulus 271 321 IPR011598 GO:0046983
Prci2g1272 423 MobiDBLite consensus disorder prediction 158 255 - -
Prci2g1272 423 MobiDBLite consensus disorder prediction 202 230 - -
Prci2g1272 423 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 166 363 IPR024097 GO:0006355
Prci2g1272 423 Pfam Helix-loop-helix DNA-binding domain 268 316 IPR011598 GO:0046983
Prci2g1272 423 CDD bHLH_AtBPE_like 255 340 - -
Prci2g1272 423 MobiDBLite consensus disorder prediction 231 252 - -
Prci2g1272 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 315 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1272 Prci-Chr2 9489196 9492911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1272 1 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.109 1.52e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci2g1272 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1272 - - gmx:100801930 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1272 2 9489196 9492911 Prci2g1272 2 9489196 9492911 ECH