Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1259 ATGGAGGAATATAATAATAATCTGAGCGAAAACAATGGCGGAAGGGCTAATTTCTTGTACTCTTCGGGTGGTATTGGGTACGGAAGAAGTAGCAGCGGTGGTTCCAGCGTTGCTCATCAGTTGCCTATCAATACTTTCCATCTTCAGTCCGGTGCTTCTGACTGCTTTCACCAATCCGATCAGCCTCATCCCACTGTCAAAACCGAAGCCAATACCTCGCACCACGCTCAGATTTTTCAGTATCCTCTACTCAGGGGGAATCTTCACATGATGCACCCCCAAGGAGGAGGCGCTGACAGCTCCAACGAGGTTGAAGCTATCAAGGCTAAAATCATTGCACATCCTCAGTACTCCAACCTCTTGCAAGCTTACATGGATTGCCAAAAGGTGGGAGCTCCACCGGAAGTGGTGGCGCGTCTGGCTGCTGCTCGCCAGGAGTTTGAGGCACGGCAGCGATCTTCATCTGCTTCTCGGGAGGTTTCTAAGGACCCTGAACTGGACCAATTCATGGAAGCTTATTATGACATGCTTGTGAAGTATCGAGAGGAATTGACGAGGCCTATCCAAGAAGCCATGGATTTCATGCGCAGGATTGAAACTCAACTCAATATGCTTTGCAATGGATCCATCCGTATCTTCTCTGATGATAAGTGTGAAGGGGTAGGCTCGTCTGAAGAGGATCAAGACAATAGTGGCGGAGAAACAGAGTTGCCGGACATTGATCCCAGAGCTGAAGACCGTGAACTTAAGAACCACTTGCTGAGGAAGTATAGCGGTTACTTGAGCAGCCTCAAGCAAGAACTGTCCAAGAAAAAGAAAAAAGGAAAACTGCCCAAAGATGCCAGGCAAAAGTTGCTCAACTGGTGGGAATTACATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTGGCGTTGGCTGAATCAACTGGGTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTCATGGTGATGGATGGGCTTCATCCACAGAACGCGACTCTCTATATGGATGGCCACTACATGCCAGATGGTCACTACCGCCTGGGCCCATGA 1101 0.4814 MEEYNNNLSENNGGRANFLYSSGGIGYGRSSSGGSSVAHQLPINTFHLQSGASDCFHQSDQPHPTVKTEANTSHHAQIFQYPLLRGNLHMMHPQGGGADSSNEVEAIKAKIIAHPQYSNLLQAYMDCQKVGAPPEVVARLAAARQEFEARQRSSSASREVSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGSIRIFSDDKCEGVGSSEEDQDNSGGETELPDIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMPDGHYRLGP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1259 366 ProSiteProfiles 'Homeobox' domain profile. 268 331 IPR001356 GO:0003677
Prci2g1259 366 Pfam ELK domain 248 269 IPR005539 GO:0003677
Prci2g1259 366 SMART ELK_2 248 269 IPR005539 GO:0003677
Prci2g1259 366 FunFam Homeobox protein knotted-1-like 2 273 335 - -
Prci2g1259 366 SUPERFAMILY Homeodomain-like 269 343 IPR009057 -
Prci2g1259 366 Gene3D - 273 335 - -
Prci2g1259 366 SMART HOX_1 270 335 IPR001356 GO:0003677
Prci2g1259 366 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 338 - -
Prci2g1259 366 CDD homeodomain 280 332 IPR001356 GO:0003677
Prci2g1259 366 ProSitePatterns 'Homeobox' domain signature. 306 329 IPR017970 GO:0000981|GO:0006355
Prci2g1259 366 MobiDBLite consensus disorder prediction 217 244 - -
Prci2g1259 366 SMART KNOX2_2 156 207 IPR005541 GO:0003677|GO:0005634
Prci2g1259 366 Pfam Homeobox KN domain 288 327 IPR008422 GO:0003677|GO:0006355
Prci2g1259 366 Pfam KNOX2 domain 160 206 IPR005541 GO:0003677|GO:0005634
Prci2g1259 366 ProSiteProfiles ELK domain profile. 248 268 IPR005539 GO:0003677
Prci2g1259 366 Pfam KNOX1 domain 106 148 IPR005540 GO:0003677|GO:0005634
Prci2g1259 366 SMART KNOX1_2 105 149 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1259 Prci-Chr2 9356000 9359954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1259 48 366 Homeobox Transcription Factor Family AT4G08150 70.909 1.99e-152 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci2g1259 KNOX2 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1259 - - gmx:100807602 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1259 2 9356000 9359954 Prci2g1259 2 9356000 9359954 ECH