Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1254 ATGGGAAGAGCTCCTTGCTGTGACAAAGCCAATGTCAAGAGAGGCCCTTGGTCTCCCGAAGAAGACGCTACTCTCAGGACTTACGTTCAAACTCATGGCACCGGTGGTAACTGGATTGCATTGCCCCGAAAAGCTGGCCTTCGGAGATGTGGCAAGAGTTGCCGTCTACGGTGGCTCAATTACCTAAGGCCAGACATCAAACACGGAGGTTTTACTGAAGAAGAGGACAACATCATTTTTACCCTTTATGGGCAAATGGGAAGCAGATGGTCGGCCATAGCCTCTCAGCTTCCTGGTAGAACAGACAATGATGTGAAAAACTACTGGAACACCAAGTTGAAGAAGAAGCTAATGGCAGGAAAAGTGAACCTCAAAACAATGACAGACAGTCGCAGTACTCTTCCTTCGACCCCATTACTGACTCACAATGTTCATACTCAAAGCCAAAATTCAGATTTTCCTGCTTCTCAAAACCAGAGTTCATCTCCCAGCTCAACTCTGCCCATCCTGACCGATGCTAATTCTGGGTTTTACATTAACACTCACACCATGATCAGTTTCGATCCGAATCAATTATACAATCCGGGTTTCATGGATATCTCAGAAATTAATAACGCAAGCTCAAGTATGATGTCCATGTCTCAGGAAGGTTCAAGCATTTCAGATTCATCTTTGATTGCAACGGATAACAAGTGTTTGTTGCTGCCAGATCATGCCGGCGACGAGGCTACCCAAGTATTAATGAATTTTGGGTATGGATTTCCCTCTGACATTGTCAATAATGGATTTTACTCCCAAGAGGAAATTGGTGAATTCGCTTCAATTTTCTATCCTCATGAATTGGTTGATTTTAGCAATGCTGACATGAAGCCACAGGGACGGAATTGA 888 0.4426 MGRAPCCDKANVKRGPWSPEEDATLRTYVQTHGTGGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIIFTLYGQMGSRWSAIASQLPGRTDNDVKNYWNTKLKKKLMAGKVNLKTMTDSRSTLPSTPLLTHNVHTQSQNSDFPASQNQSSSPSSTLPILTDANSGFYINTHTMISFDPNQLYNPGFMDISEINNASSSMMSMSQEGSSISDSSLIATDNKCLLLPDHAGDEATQVLMNFGYGFPSDIVNNGFYSQEEIGEFASIFYPHELVDFSNADMKPQGRN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1254 295 CDD SANT 71 113 IPR001005 -
Prci2g1254 295 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Prci2g1254 295 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Prci2g1254 295 FunFam Transcription factor RAX3 7 68 - -
Prci2g1254 295 MobiDBLite consensus disorder prediction 128 166 - -
Prci2g1254 295 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Prci2g1254 295 Gene3D - 7 68 - -
Prci2g1254 295 SMART sant 13 64 IPR001005 -
Prci2g1254 295 SMART sant 67 115 IPR001005 -
Prci2g1254 295 CDD SANT 16 62 IPR001005 -
Prci2g1254 295 Gene3D - 70 135 - -
Prci2g1254 295 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Prci2g1254 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Prci2g1254 295 PANTHER OS09G0431300 PROTEIN 1 222 - -
Prci2g1254 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Prci2g1254 295 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1254 Prci-Chr2 9307002 9308918 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1254 1 218 MYB Transcription Factor Family AT5G57620 50.209 9.38e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g1254 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1254 K09422 - qsa:O6P43_019065 358.992