Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01980 ATGGAAAACCACATCTACTCCTCCTACAGCCCTTCCACCAACTACCGATTCCGCGACCCCGACCCCTCAACCATGTTCCTCTCCCACCACCACCATCGCGCCGCCGACTCCGCCTCCCTCCGCTTCTCCTCCTCCCTCGCCGACGACATTGCCCCGCCTGGCGTCACCTCCCGCGTAGCCTCCTCCGCCGCCGCCAACTACCTCTCCCCCTGGGCCTCCTCCGCCGCCACCTCCTCCCTCGACTTCAAACGCTCCTCCGACGCTCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGGTATGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGAGAGAAAGATTGTGCCCACTATATGCTCACGAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTGTTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAGAGATGCAAGTTTGGTTCGAAGTGCAAATTTAATCATCCTATGGTTTCCTCTGAAAACGATGATGTATCTTCTGGCTTACCTGAGAGGCCATCAGAGCCCCCTTGCACGTTCTACATGAAAACTGGAAAATGTAAATTTGGTGCTGCTTGCAAATTCCATCACCCCAAGGATATCCAGATTCAGTTGTCTGATGAGTTGAGTCATACTGCTGCACAGACAGAAACAAGTTCTATGATAGCAGCAGGGGCATTTGGAGATACACAGCCTATTAAGTCTCTTATATCTCCATCATTGCAAAATAGCAAAGGACTTCCAGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAGTATGGTGCCACTTGCCGCTACAATCATCCTGACAGGAACGCAATTAATCCACCCATTGCTGGATTAGGCGCTTCTATTTTGCCATCCTCAGCTGCTAGTCTGAATATTGGACTTCTTAGTCCAGCTGTGTCTGTCTATCAAGCTTTTGACCCAAGGCTGTCGAATCCAATGTCTCAGGTGGGAATTGCAGAAAGTATCTATCCTCAGCGACCTGGCCAGATTGAATGTGATTTTTACATGAAAACTGGCGAGTGTAAATTTGGGGAAAGATGCAAGTATCATCACCCAATTGATCGCTCAGCACCATCACTGTCAAAGCAGGCTTCTGTCAAGCTCACTCCTGCAGGATTACCTAGAAGAGAGGGTGCTGTTATTTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTGTGGAGATGGCAAAATCACAAGGAACATCAGCCGATGGAGGGGAAGCAGAAGACTGA 1458 0.4883 MENHIYSSYSPSTNYRFRDPDPSTMFLSHHHHRAADSASLRFSSSLADDIAPPGVTSRVASSAAANYLSPWASSAATSSLDFKRSSDALYHPTILGTIGQSEAWYSTNSLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPMVSSENDDVSSGLPERPSEPPCTFYMKTGKCKFGAACKFHHPKDIQIQLSDELSHTAAQTETSSMIAAGAFGDTQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINPPIAGLGASILPSSAASLNIGLLSPAVSVYQAFDPRLSNPMSQVGIAESIYPQRPGQIECDFYMKTGECKFGERCKYHHPIDRSAPSLSKQASVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVVEMAKSQGTSADGGEAED 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01980 485 Gene3D - 166 213 - -
Phco9g01980 485 Gene3D - 87 165 - -
Phco9g01980 485 ProSiteProfiles Zinc finger C3H1-type profile. 386 414 IPR000571 GO:0046872
Phco9g01980 485 Gene3D - 384 478 - -
Phco9g01980 485 SUPERFAMILY CCCH zinc finger 226 250 IPR036855 GO:0046872
Phco9g01980 485 ProSiteProfiles Zinc finger C3H1-type profile. 436 464 IPR000571 GO:0046872
Phco9g01980 485 PANTHER PROTEIN PHOSPHATASE RELATED 288 472 - -
Phco9g01980 485 SUPERFAMILY CCCH zinc finger 185 207 IPR036855 GO:0046872
Phco9g01980 485 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Phco9g01980 485 FunFam Zinc finger CCCH domain-containing protein 37 87 165 - -
Phco9g01980 485 FunFam zinc finger CCCH domain-containing protein 37 384 477 - -
Phco9g01980 485 SUPERFAMILY CCCH zinc finger 440 463 IPR036855 GO:0046872
Phco9g01980 485 SUPERFAMILY CCCH zinc finger 389 414 IPR036855 GO:0046872
Phco9g01980 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 207 IPR000571 GO:0046872
Phco9g01980 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 326 IPR000571 GO:0046872
Phco9g01980 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 389 412 IPR000571 GO:0046872
Phco9g01980 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 440 463 IPR000571 GO:0046872
Phco9g01980 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 154 IPR000571 GO:0046872
Phco9g01980 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 249 IPR000571 GO:0046872
Phco9g01980 485 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Phco9g01980 485 FunFam Zinc finger CCCH domain-containing protein 37 166 213 - -
Phco9g01980 485 Gene3D - 219 334 - -
Phco9g01980 485 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Phco9g01980 485 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Phco9g01980 485 SMART c3hfinal6 436 463 IPR000571 GO:0046872
Phco9g01980 485 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Phco9g01980 485 SMART c3hfinal6 180 207 IPR000571 GO:0046872
Phco9g01980 485 SMART c3hfinal6 222 249 IPR000571 GO:0046872
Phco9g01980 485 SMART c3hfinal6 386 413 IPR000571 GO:0046872
Phco9g01980 485 ProSiteProfiles Zinc finger C3H1-type profile. 180 208 IPR000571 GO:0046872
Phco9g01980 485 SUPERFAMILY CCCH zinc finger 128 155 IPR036855 GO:0046872
Phco9g01980 485 SUPERFAMILY CCCH zinc finger 304 327 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01980 Phco-Chr9 44708243 44729639 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco9g01980 zf-CCCH 1.5e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01980 9 44708243 44729639 Phco9g01980 9 44708243 44729639 ECH