Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01979 ATGGTGACAAGTAAACCAACATCTAAACCTCACAAGTTTGCAGATCATAACAATAATATTTCTGAGTTTTCCACTGCTCAACACCTGACTCCAAGTGCAAGAATGTTTTCAAATCACAATCATTCAACCATATCATTAGGAGCAACAACAGAAACTACAAGAAAATTTCTTGTACCCGCAAGAAACACCATTCAAGGTCATAGAAGTGGCACTAGCTTTAGTAGTGAAAGTTTAGAGAGCATTTGTAATGCACATATTAAGCCACATACTAGAGGTGATGTGAGGTGGGATGCAATTAATAGTGTTGCTAAGGGTAATGATCTTAATCTCAGTCATTTTAGGCTTTTGAAGCGTGTTGGATATGGTGATATTGGAAGTGTGTACCTTGTGGAACTTAAAGGAAGCAAAACATTCTTTGCTATGAAAGTTATGGACAAGGAATCACTTGCTAGTAGAAACAAGCTTTTGAGGGCACGAACAGAAAGAGAGATTCTTGAACTTCTCGACCACCCTTTTTTACCAACTTTATATTCTTATTTTGAGACTAATAAGTACTATTGTTTGGTCATGGAGTTTTGTAGTAGTGGCAGTTTGCATTCTCTTCGACTAAAGCAACCTAACAAGCATTTCACTGAAGAAGCTACACGGTTTTATTGTTCAGAAATTTTGCTAGCTTTGGAATACTTGCACATGTTAGGCATTGTGTATAGAGACTTAAAACCAGAAAATGTTCTAGTTCGAGATGAAGGTCACATAATGTTATCGGATTTTGACTTATCTCTTCGATGCTCTGTGAATCCTACACTAGTGAAGTCATCATCTGCACATGAAAGTAGTAATGGTCCTTCTGGGGGCATTTTGAATGATGAGCAAGCAATACATGGTTGCAGACAACCCTCAAGTTTCTTTCCACACATTTTACCTTCAAAAAGGAATCACAAGTCAAAGTCAGATTTTGGCCTCATGGTTGGAGGATGCCTCCCTGAGCTAATGGCTGAGCCTACAAATGTGAGATCAATGTCCTTTGTAGGGACACATGAGTATCTTGCACCTGAGATTATTCGTGGTGAAGGACATGGTAGTGCAGTGGATTGGTGGACCTTTGGAATCTTCTTATATGAGCTTTTGCATGGCATAACACCCTTTAAGGGTGCTGGAAATAAAGCTACCCTTTTCAATGTTGTAGGACAACCCTTAAGGTTTCCTGAAAAACCCACTGTTAGCAAAGTTGCAAAAGACCTTATACAAGGATTGTTGGTGAAAGAGCCTAAAACAAGATATGCTTACAAGAGGGGTGCCACAGAAATAAAGCAACACCCTTTTTTCCATGGAGTGAATTGGGCTCTTGTTAGAAGTGCTACACCTCCTATTATACCAGAACCTTTAGATTTTTCCAAGTACGGTAGAAAAGCAAAATATTCACCAATGGATAAGAAGATTGCAGATATTGTTGCAAGTGATAAAAGCAAGCATACACGTCCAAATCCATCTTATGAAGATTTTGAGTACTTTTAG 1515 0.3855 MVTSKPTSKPHKFADHNNNISEFSTAQHLTPSARMFSNHNHSTISLGATTETTRKFLVPARNTIQGHRSGTSFSSESLESICNAHIKPHTRGDVRWDAINSVAKGNDLNLSHFRLLKRVGYGDIGSVYLVELKGSKTFFAMKVMDKESLASRNKLLRARTEREILELLDHPFLPTLYSYFETNKYYCLVMEFCSSGSLHSLRLKQPNKHFTEEATRFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSAHESSNGPSGGILNDEQAIHGCRQPSSFFPHILPSKRNHKSKSDFGLMVGGCLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGITPFKGAGNKATLFNVVGQPLRFPEKPTVSKVAKDLIQGLLVKEPKTRYAYKRGATEIKQHPFFHGVNWALVRSATPPIIPEPLDFSKYGRKAKYSPMDKKIADIVASDKSKHTRPNPSYEDFEYF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01979 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Phco9g01979 504 FunFam Serine/threonine-protein kinase D6PK-like 111 196 - -
Phco9g01979 504 SUPERFAMILY Protein kinase-like (PK-like) 110 466 IPR011009 -
Phco9g01979 504 FunFam Serine/threonine-protein kinase AGC1-7 335 460 - -
Phco9g01979 504 Pfam Protein kinase domain 114 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01979 504 Pfam Protein kinase domain 336 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01979 504 Gene3D Transferase(Phosphotransferase) domain 1 310 460 - -
Phco9g01979 504 FunFam serine/threonine-protein kinase D6PK-like 197 264 - -
Phco9g01979 504 Gene3D Phosphorylase Kinase; domain 1 111 196 - -
Phco9g01979 504 Gene3D Transferase(Phosphotransferase) domain 1 197 266 - -
Phco9g01979 504 ProSiteProfiles Protein kinase domain profile. 113 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01979 504 PANTHER FLIPPASE KINASE 1-RELATED 43 467 - -
Phco9g01979 504 CDD STKc_phototropin_like 111 463 - -
Phco9g01979 504 SMART serkin_6 113 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01979 Phco-Chr9 44692715 44696208 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco9g01979 Pkinase 5.1e-37 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01979 9 44692715 44696208 Phco9g01979 9 44692715 44696208 ECH
Phco10g00446 10 4197276 4200408 Phco9g01979 9 44692715 44696208 PCT