Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01972 ATGACACAACCATCCGCACCTCCGCCTCCTCCTCCTCCGCCGCTCGCGCCTCCGCCGCCGACAACTCCGCCGCCTCCTCAGCAGGCCGAGAGCGTCCGCGTGCGCTGTGCCGGCTGCCGCATGATCCTCACAGTGGCGCCCGGCCTAACGGAGTTCGCCTGCCCTACCTGCCGAATGCCGCAGATGCTTCCGCCGGAGCTCATGCCTAGGGAGCGTGCTGCCGCCGCCGCAAATGCGCCAACACCGGTTCCTCCGACGTCCGCTCCGACCTCACAGCCTCCGCACGCGCCTGCACACGGCATTGATCCCACTAAGATCCAGCTTCCCTGCGCTTCTTGTAAGGCCATCCTAAACGTCCCTCACGGCCTCGCGCGCTTCGCTTGCCCTCAGTGCAACGTTGACCTAGCCGTCGATGTTTCCAAGGTCAAGCAGTTCTTCCCCGCCGCTCCTCCGCTAGAAGAAGTTAATGAGGTTGCTGTTGAAGTGGAGAGGGACGAGGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGGCCACCAAAAGTATCTATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCACCTGAGCCAATTTATGATCCAAAAATTAAAGATGATTTGGAGAGTTCAAAGACTTTGTCTTGCTTGCAAATTGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAACATCTCCCAAATGGAGCCAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGAACAATAGCAGGATTAATTTGGGAGAACTGGCATCATGGAAGGAGGAAAGCTTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGTGGGTGCAACATGCGTTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGATCAGGGAGGGAGTTGTTTTCTTGACGTACAATAGTCTCATAGCATCTTCTGAGAAAGGTCGTACTCGTCTCCAGCAGCTTGTACAGTGGTGTGGACCAGGGTTTGATGGTCTTATAATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTCCCTGAAGCTGGTAGTCAGCCTACACGAACTGGAGAGGCAGTGCTTGATATCCAGGACCGACTGCCTGAAGGTCGTGTTGTTTATTGCTCAGCAACTGGGGCATCTGAGCCTCGCAATCTGGGTTATATGGTTCGACTTGGTCTTTGGGGAGATGGGACATCATTCTTAGATTTCCGCGAATTTCTAGGTGCTCTGGACAGAGGGGGTGTTGGAGCTCTTGAATTAGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTATGCCGGACGCTTAGCTACGAAGGTGCAGAGTTTGAAGTTATTGAAGCACCATTAGAAGAGAAAATGATGGAAATATATAAAAAGGCAGCAGAATTTTGGGCTGAATTACGAGTAGAATTGCTGTCAGCCAGTGCCTTCCTAAATGATAAACCTAATTCTAGTCAACTGTGGCGCTTATACTGGGCAAGCCATCAGCGTTTCTTTAGACACCTATGTATGTCTGCTAAAGTCCCTGCTGCGCTGAGACTAGCGAAGCAAGCATTAGTTGAAGAAAAATGTGTAGTCATTGGTCTTCAGAGTACTGGAGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTACCCTTTACCAGAAAAACCTGAACTTCTTCCAGGAGAAGATGGGGTGAAAGAACTCCAAAGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAGTAAAAGGCAGGGTCAGAAAAGTGGCCAAGTGGCAACCTCCTAGTGATGCTGAAAGTGATGAAGAATCTGAAACTGACTCTGGTGTTGAATCTACTGATTCTGATGATGAGTTTCAAATATGTGAAATTTGTACTACTGAGGAGGAAAAGAAAAAAATGCTACAGTGTTCTTGCTGCGGTAAATTAGTCCATTCCACATGCTTGATGCCACCAATTGGTGATGTAGTTCCTGAAGAGTGGTCATGCCATTTGTGTAAGGAAAAAACAGATGAATATCTTCAAGCAAGACAGGCTTACATAGCTGAACTTCAAAAGAGGTATGATGCAGCCTTGGAACGCAAGACAAAAATATCAGAGATAATTCGGACTTTGGATCTTCCAAATAATCCTTTGGATGATATTGTTGACCAGCTAGGAGGCCCTGACAAAGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGGGCTGCTACGGGCAAGGGTGTAACTTATCAGGCTCGTAACACAAAAGATGTCACCATGGAAATGGTTAACATGCATGAAAAGCAGCTCTTTATGGATGGTAAAAAGTTAGTTGCCATTATCTCTGAGGCAGGATCTGCTGGTGTTTCATTGCAGGCAGATAGACGAGCTGCTAACCAGAAAAGAAGGGTTCATTTAACCCTGGAACTTCCATGGAGTGCTGACCGGGCAATTCAACAGTTTGGAAGAACACATCGATCAAATCAAGCTTCTGCACCAGAATACAGGATACTCTTTACAAATCTTGGTGGAGAACGAAGATTTGCATCAATTGTTGCCAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGTGACCGCAGGGCTGGACCTTCATTGAGTGCTTATAATTATGATAGTGCCTATGGAAAAAAGGCTCTGATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTGCCTGTGGTACCTCCGGGATGTTCATCTGACAAACCAGATACAATTCATGATTTTATTGTGCAAGCCAAAGCTGCTCTGGTATCTGTTGGAATAGTAAGGGACACGGTCCTTGGTAATGGTAAAGATCTTGGAAGATTATCTGGTCGCATTATTGATTCAGATATGCATGAAGTTGGGCGGTTCCTCAACAGGATTTTGGGACTACCTCCTGATATTCAGAATGGGCTATTTGAACTATTTGTGAGTATCTTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTTGACGCAGGCATTGTTGACTTGAAAGCTAATGTAATTGAATTACAAGGGACTCCAAAGACTGTTCATGTTGATCAATTGACTGGGGCCTCAACAGTTCTGTTTACATTTGTCTTAGATCGTGGGATCACATGGGAGTTGGCAAGTATGATGCTGAATGAAAAGCAGAGGGATGGACTTGGTTCAGCCAATGATGGCTTCTATGAGTCCAAGAGGGAGTGGTTGGGAAAACGTCATTTCATTTTAGCATTTGAAAGTTCTGCTTCGGGTACATATAAAATAGTTCGACCCCCTGTTGGAGAATCAAACAGGGAGATGCCTCTGTCTGAATTAAAAAGTAAATATAGAAAGATTTCGTCTTTAGAGAAGGCTCAGTCTGGTTGGGAAGAGGAATATGAAGTTTCATCCAAACAGTGCATGCATGGTCCCAATTGTAAGATTGGCAACTTTTGTACAGTTGGTAGAAGACTACAGGAAGTAAATGTCTTGGGTGGTCTCATCCTTCCTGTGTGGGGAGCCGTAGAAAAGGCCCTTTCAAAACAGGCCCGTCTAAGCCATAGGAGGTTACGCGTTGTACGCATTGAAACTACTGTGGACACCCAACGTATTGTTGGGCTTCTTGTTCCTAATGCAGCAGTGGAAAATGTGCTTCAAGGTTTAGCATGGGTTCAAGAAATTGATGATTGA 3804 0.4598 MTQPSAPPPPPPPPLAPPPPTTPPPPQQAESVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMPRERAAAAANAPTPVPPTSAPTSQPPHAPAHGIDPTKIQLPCASCKAILNVPHGLARFACPQCNVDLAVDVSKVKQFFPAAPPLEEVNEVAVEVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPEPIYDPKIKDDLESSKTLSCLQIETLVYACQRHLQHLPNGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCVEVHALNKLPYSKLDSKSVGIREGVVFLTYNSLIASSEKGRTRLQQLVQWCGPGFDGLIIFDECHKAKNLVPEAGSQPTRTGEAVLDIQDRLPEGRVVYCSATGASEPRNLGYMVRLGLWGDGTSFLDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEEKMMEIYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHLCMSAKVPAALRLAKQALVEEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEESETDSGVESTDSDDEFQICEICTTEEEKKKMLQCSCCGKLVHSTCLMPPIGDVVPEEWSCHLCKEKTDEYLQARQAYIAELQKRYDAALERKTKISEIIRTLDLPNNPLDDIVDQLGGPDKVAEMTGRRGMLVRAATGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKKALMIMYKGIMEQDSLPVVPPGCSSDKPDTIHDFIVQAKAALVSVGIVRDTVLGNGKDLGRLSGRIIDSDMHEVGRFLNRILGLPPDIQNGLFELFVSILDLLVRNARIEGNLDAGIVDLKANVIELQGTPKTVHVDQLTGASTVLFTFVLDRGITWELASMMLNEKQRDGLGSANDGFYESKREWLGKRHFILAFESSASGTYKIVRPPVGESNREMPLSELKSKYRKISSLEKAQSGWEEEYEVSSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGAVEKALSKQARLSHRRLRVVRIETTVDTQRIVGLLVPNAAVENVLQGLAWVQEIDD 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01972 1267 MobiDBLite consensus disorder prediction 633 662 - -
Phco9g01972 1267 SMART PHD_3 668 714 IPR001965 -
Phco9g01972 1267 MobiDBLite consensus disorder prediction 1 27 - -
Phco9g01972 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 432 IPR027417 -
Phco9g01972 1267 FunFam Protein strawberry notch homolog 2 220 420 - -
Phco9g01972 1267 Pfam PHD-finger 668 716 IPR019787 -
Phco9g01972 1267 Pfam C-terminal domain on Strawberry notch homologue 757 1046 IPR026937 -
Phco9g01972 1267 Coils Coil 728 748 - -
Phco9g01972 1267 ProSiteProfiles Zinc finger PHD-type profile. 666 716 IPR019787 -
Phco9g01972 1267 SUPERFAMILY FYVE/PHD zinc finger 659 719 IPR011011 -
Phco9g01972 1267 MobiDBLite consensus disorder prediction 646 662 - -
Phco9g01972 1267 MobiDBLite consensus disorder prediction 72 101 - -
Phco9g01972 1267 MobiDBLite consensus disorder prediction 1 31 - -
Phco9g01972 1267 PANTHER STRAWBERRY NOTCH-RELATED 29 1261 IPR026741 GO:0006355
Phco9g01972 1267 ProSitePatterns Zinc finger PHD-type signature. 669 713 IPR019786 -
Phco9g01972 1267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 652 738 IPR013083 -
Phco9g01972 1267 Gene3D - 216 418 IPR027417 -
Phco9g01972 1267 Pfam P-loop containing NTP hydrolase pore-1 189 489 IPR039187 -
Phco9g01972 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 812 917 IPR027417 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco9g01972 AAA_34 2.9e-131 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01972 9 44602153 44627860 Phco9g01972 9 44602153 44627860 ECH