Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00578 ATGTTTCTGAGGTTACCTGCCATGAACAGGAGTTTCAACAGAGAAAATCCAGATATTTTGATTATGATGATTGCAGGGCAACAGATAATAAGGGGTGTTGAGGAGGACAAAAGAGATCAGAGAGAGCCAAGACATGGGCCCAGTCCTCCAAAGACAGCATATATTGGCAAGGAGTTGTTAAATGTTACTCCTTTGCGGATTAAAGATATATACATTGCTCCACTGGACATTTCTGGCCGAGGTGCTACAGTAAGAGATGAAATTTCCCAACATTACACCTCAAATCCTCTCATTCAGTGCTATTCACTTGACCTTAACAACCAATCCCACATCATAAATGGAATTTCAATGCTTTCTGGAGATCAAGTTGAACCTATTAGTAATGTCGATGCTGATGCTTGCTTCATTAATCCATCAATTATTGCTGACTCTAATCCATTAGTTACATCACGAAGAAAGAGTATTGTGGGACATGCCTCAAATCCCATGGAGAACACTGAGTTTCTGGAGCATTTAGTTGGAGGAGTGCCACTCACTCCTGCTTCGCTTGCTGCCATTCTTGCTGCTAGAATTGGTCTTGAAGAAAATTTGGAGAATTCGGCAGCCCTGCCTCCCTCAAACTGCTCCACGGGGGCACTAGAGGTATTCTTCAACAATTTGCAAGGTACTTCAAACCCTTTGTCTGCAACTTTTGAGGACTGTGATTACAATGAAGTTCCTAGTAAGTGGAATGCTAACAAATTTCATAAAGCTCCAGAGATTGATGGAACTTGTCAGCCTTATTCTTCTATAGCAAATCTGGATCCAAATGAATGGGCAACATCAAACTTTGCAAACATGGCCAGTTATGCTTACTATTCCTCTAACTTTAGTAAAGAACTTTCTCTAAGTCTTGCGACATCTACAACCCCAGGACAGTACTCAGAGGTGACTTGCTCTAATATGACCCCTTGCATGAATGGAACCATTTCCTGCAGCAGTAGTAGGGAACTTTCTATGAATTTGGGTGGTAATAAATATGTGCAATTTTCACCAGAAGTACTAGAATCGAGATACCTTCTTGGGATTCAAGAGATACTTGCTCAAATTGCACGATATTCATTTGAAAATCTGAAACAATTAAATTATTCAGCACCTGGTAATAGAGCAGGTGGAAACAAGTCAGCTTCAGCTTTTCCACCCAAGAGAAATATCTTGACAGATCACAGTGCAAATTCTATTTACGAATCTCATGCAGAGTCTCCACTGCAAAGGCGGGTTGCTGAATCGAAGAAAGCCCAGCTGCTGACACTTTTACAACTGGTGGACAATCGATACAGCCAGTGTTTGGATGAGATACATACTGTTATATCTGCATTTCATGCAGCTACCGAGCTGGACCCACAAATACATGCACATTTTGCTCTTCAAACCATCTCTGTCCTTTACAAGGACTTACGGGAGAGGATTAGCAACTGCATTCTTGCCATGGGATCAAGTTTCAACAAATCGTGTGCGGAAGAGAATGAATGGTCTATTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGCTGTGGAGGCCCCAGAGAGGCTTGCCAGAAAGATCTGTCTCGGTTCTACGGGCATGGATGTTTCAGAATTTCTTACACCCGTATCCCAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACAAGAAGTCAGGTATCCAACTGGTTTATAAATGCTCGTGTCCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAACAAAAGAAAGGCTTGTCGAAATGAAGAAGGATTCCAGACTAACCATGGAAACAGGATAGGCATGAGTAATCAAAGGTTTAATGTTAACTAA 1881 0.4152 MFLRLPAMNRSFNRENPDILIMMIAGQQIIRGVEEDKRDQREPRHGPSPPKTAYIGKELLNVTPLRIKDIYIAPLDISGRGATVRDEISQHYTSNPLIQCYSLDLNNQSHIINGISMLSGDQVEPISNVDADACFINPSIIADSNPLVTSRRKSIVGHASNPMENTEFLEHLVGGVPLTPASLAAILAARIGLEENLENSAALPPSNCSTGALEVFFNNLQGTSNPLSATFEDCDYNEVPSKWNANKFHKAPEIDGTCQPYSSIANLDPNEWATSNFANMASYAYYSSNFSKELSLSLATSTTPGQYSEVTCSNMTPCMNGTISCSSSRELSMNLGGNKYVQFSPEVLESRYLLGIQEILAQIARYSFENLKQLNYSAPGNRAGGNKSASAFPPKRNILTDHSANSIYESHAESPLQRRVAESKKAQLLTLLQLVDNRYSQCLDEIHTVISAFHAATELDPQIHAHFALQTISVLYKDLRERISNCILAMGSSFNKSCAEENEWSIETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEGFQTNHGNRIGMSNQRFNVN 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00578 626 ProSiteProfiles 'Homeobox' domain profile. 524 587 IPR001356 GO:0003677
Phco7g00578 626 CDD homeodomain 527 588 IPR001356 GO:0003677
Phco7g00578 626 Pfam Homeobox KN domain 544 583 IPR008422 GO:0003677|GO:0006355
Phco7g00578 626 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 282 601 - -
Phco7g00578 626 SMART prehox3 341 485 IPR006563 -
Phco7g00578 626 SMART HOX_1 527 591 IPR001356 GO:0003677
Phco7g00578 626 SUPERFAMILY Homeodomain-like 529 596 IPR009057 -
Phco7g00578 626 Gene3D - 530 609 - -
Phco7g00578 626 Pfam Associated with HOX 347 484 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00578 Phco-Chr7 4336515 4339732 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco7g00578 POX 3.4e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00578 7 4336515 4339732 Phco7g00578 7 4336515 4339732 ECH
Phco2g00402 2 3452588 3456888 Phco7g00578 7 4336515 4339732 PCT