Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00550 ATGGATGAGAGTAGTACCGATGATGGAAACAATCATAACTGGTTGGGGTTCTCTCTTTCACCCCACATGAAAATGGAGGTTACTTCAGCAGCCACAGTTCCAACAACCTTCTACATGTCCTCTCCTCACATTTCCAGCTCAGGAATCTGTTACGGTGTCGGGGCAAATGGTAACTTCCATTCTCCTCTTACCGTTATGCCTATTAAGTCAGATGGGTCACTTTGTATCTTGGAAGCTCTCAATAGATCACAATCAGAAGTGATGGTGCCAAATTCTACGCCTAAATTGGAGGACTTCCTTGGTGGTGCAACTATGGGAAGTCACGAATATGGGAGCAACGAGAGAGGGGCAAATGCAATGGCTCTGAGTCTAGACAGCATCTATTATAGCACCCATAATGCTCAGGCTCAACCCAACAGAGACACTCTCTCAGAACCCTTCAGGCAACAAGGGCATATGAACGTCCAAACGCACCCTTATTACTCAGGACTTGGTTGCCACGGGATGTATCAAGCACAGTTGGAGGAAGAAGCAACGAAGGAAGCCAACGCATCAGTTTGCAGCTCCCTAATGCCTCAAATGACTGAAAATAGTTTGAAAAACTGGGTGGCTACAAGGGAATATTCAACTCAACAGCAGATTTTGGAGCAGCAAATGAACTGTGGAATGGGGAATGAGAGAAGTGGCATGTCTCTTGGAACTGTGGGGTGTGGCGAGTTGCAGTCACTGAGTTTATCGATGAGTCCCGGTTCTCAGTCTAGTTGTGTCACTGCGCCTTCTGTGACAGATTCTGTGGCTGTGGATGCAAAGAAGAGAGGGCATGTAAAGCTGGGACAAAAGCAACCAGTGCACAGGAAATCTATTGACACATTTGGGCAGAGAACCTCTCAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGGTATGAAGCACATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACTAGGAAAGGAAGGCAAGTATATTTGGGGGGTTACGATATGGAAGAGAAAGCTGCAAGAGCGTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGATTGAAAATTACCAAGTTGAACTTGAAGAAATGAAGAACATGAGCAGGCAAGAATATGTTGCACACTTAAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCTTCAATATACCGAGGGGTCACAAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGTAGAGTTGCTGGGAACAAGGACCTATACCTTGGGACATTCAGCACTCAGGAGGAAGCAGCAGAAGCATACGATGTAGCCGCAATCAAATTTCGCGGCGCAAATGCAGTCACGAACTTTGACATATCAAGGTACGATGTGGAGAGAATCATGGCCAGTATTAACCTTCTCGCTGGTGAGCTTGCAAGGAGAAATAAAGATAATGATCCAAGAAACGAGGGCAGTGAGTACAATATCGAAAAAACTAACGAGGGTGTGGTGACAAGTGAGAGCAACGAGGAAATGGTTCAAGGTAGAAACAACAATGAAAACGATTCAGAGTGGAAAATGGTTTTGTTGAATCACTCTTCACAGCAGCAACAGTCAAATGGCAGTGAGCAAAAACTGATGAACTGCGGAAATTATAGAAACAGTGCATTCTCTGGGGCCCTACAAGATCTCATTGGGATTGATTCGGTGGACATGTGTAGCAAAATTGGGACTCATTTTTCAAACGCGTCCTCGCTGGTAACCAGTTTGAGCAGCTCAAGAGAGGCCAGTCCTGAGAAAACGGGTCCTTCGCTTCTGTTTCCAAAGCCCCCAATGGAAACAAAGATTGTGAACCCCATTAGTACTAGTGTTACATCTTGGTTACCCTCACCAACGGTTCAAATGAGGCCACCTCCTGCTATTTCTTTGTCTCACTTGCCAGTTTTTGCTGCTTGGACTGATACTTAA 1965 0.4555 MDESSTDDGNNHNWLGFSLSPHMKMEVTSAATVPTTFYMSSPHISSSGICYGVGANGNFHSPLTVMPIKSDGSLCILEALNRSQSEVMVPNSTPKLEDFLGGATMGSHEYGSNERGANAMALSLDSIYYSTHNAQAQPNRDTLSEPFRQQGHMNVQTHPYYSGLGCHGMYQAQLEEEATKEANASVCSSLMPQMTENSLKNWVATREYSTQQQILEQQMNCGMGNERSGMSLGTVGCGELQSLSLSMSPGSQSSCVTAPSVTDSVAVDAKKRGHVKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFSIENYQVELEEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVERIMASINLLAGELARRNKDNDPRNEGSEYNIEKTNEGVVTSESNEEMVQGRNNNENDSEWKMVLLNHSSQQQQSNGSEQKLMNCGNYRNSAFSGALQDLIGIDSVDMCSKIGTHFSNASSLVTSLSSSREASPEKTGPSLLFPKPPMETKIVNPISTSVTSWLPSPTVQMRPPPAISLSHLPVFAAWTDT 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00550 654 Pfam AP2 domain 297 355 IPR001471 GO:0003700|GO:0006355
Phco7g00550 654 Pfam AP2 domain 399 449 IPR001471 GO:0003700|GO:0006355
Phco7g00550 654 CDD AP2 296 362 IPR001471 GO:0003700|GO:0006355
Phco7g00550 654 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 91 535 - -
Phco7g00550 654 MobiDBLite consensus disorder prediction 495 514 - -
Phco7g00550 654 ProSiteProfiles AP2/ERF domain profile. 297 363 IPR001471 GO:0003700|GO:0006355
Phco7g00550 654 Gene3D AP2/ERF domain 296 365 IPR036955 GO:0003700|GO:0006355
Phco7g00550 654 Gene3D AP2/ERF domain 399 459 IPR036955 GO:0003700|GO:0006355
Phco7g00550 654 MobiDBLite consensus disorder prediction 481 514 - -
Phco7g00550 654 FunFam AP2-like ethylene-responsive transcription factor ANT 296 365 - -
Phco7g00550 654 SUPERFAMILY DNA-binding domain 296 365 IPR016177 GO:0003677
Phco7g00550 654 FunFam AP2-like ethylene-responsive transcription factor 398 459 - -
Phco7g00550 654 CDD AP2 398 459 IPR001471 GO:0003700|GO:0006355
Phco7g00550 654 SMART rav1_2 297 369 IPR001471 GO:0003700|GO:0006355
Phco7g00550 654 SMART rav1_2 399 463 IPR001471 GO:0003700|GO:0006355
Phco7g00550 654 PRINTS Ethylene responsive element binding protein signature 439 459 IPR001471 GO:0003700|GO:0006355
Phco7g00550 654 PRINTS Ethylene responsive element binding protein signature 298 309 IPR001471 GO:0003700|GO:0006355
Phco7g00550 654 SUPERFAMILY DNA-binding domain 398 459 IPR016177 GO:0003677
Phco7g00550 654 ProSiteProfiles AP2/ERF domain profile. 399 457 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00550 Phco-Chr7 4068360 4071478 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Phco7g00550 AP2 1.5e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00550 7 4068360 4071478 Phco7g00550 7 4068360 4071478 ECH
Phco2g00368 2 3075915 3079627 Phco7g00550 7 4068360 4071478 PCT