Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00383 ATGAAGAGGTTCTCTGCCTGCTGCTTCACAAGCAGAATCTCTAAGTTTCACTCTCACAGGAAGCATAACCAATCTCAGATCATGGTAGGAAACATTTCCGATCCAAGTGGGAGCAAGGGTGCAAATGTTTTACTTAATCATGACTTTTCTAGTGGCCTGAGCTCTTGGCATCTCAATTCCTGTTCTGGCTATGTGATTTCAGCTGAAACAGGTGCTCAAGGAGGAATTTCGATGGAGTTGGGTGCTAATTATGCTGTTATCACTGACCGCAAGGAATGCTGGCAAGGCCTTGAGCAAGACATCACAGATAGAATTTCCAGTGGTTACACTTACACGGTTTTGGCTTGTGTGGGAGTATCCAGTCTATCTCAGGGATCTAGTGATGTTCTAGCTACTCTGAAACTAGAATATCATGATTCAGCTACTAGTTACTTGTTCATTGGAAGAACTTCTGTTAATAAGGATAGCTGGCAAAAGTTGGAAGGGACATTCTCATTGTCAACTATGCCTGATAGGGTTGTATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACCTGCTCATACGATCAGTAGAGATAAACTGTTCCACTCCAAAGAATAATACCACAAGCACAACACGTGTTTCAGTGGGAGATGACAACATCATCATCAACCCGCAATTTGATGATGGTCTGAATAACTGGTCTGGAAGAGGCTGCAAGATTATGTTACATGATTCCATGAATGATGGGAAAATTGTTCCAAAATCAGGGAAATTCTTTGCATCTGCAACAGAACGCACACAGAACTGGAATGGAATCCAGCAAGATATCACTGGTCGCGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTCAGTTAGAATTTTTGGAAACAATGTATCTACTGCTGATGTACGTGCTACTTTGTGGGTCCAAGCACCAGATCTTAAAGAACAATATATAGGCATTGCAAATTTGCAGGCAACAGATAAAGATTGGGTTACTATGCAGGGAAAATTCCTTCTAAATGGTTCTCCATCAAAAGTGGTCCTTTATTTAGAGGGGCCCCCTCCAGGCACTGACATTCTTCTCAATAATTTGATCTTAAAGCATGCAGCTAAAACACCTCCTTCATCCCCGCCAGATGTAAAGAATGTTACTTTTGGGGTTAATATAATTGAGAACAGCACTCTAGCTGATAGCACCAATGGATGGTTTCCCCTTGGCAATTGCACTTTAAGTGTTAAAACTGGTTCCCCACATATAGTTCCACCAATGGCAAGAGATTCTCTTGGTCCTAGTGAACTCCTAGGTGGGCGCTACATCCTTGTAACTAATCGAACACAAACATGGATGGGTCCTGCTCAGATCATCACTGATAAAGTGAAACTCTTTTTGACTTATCAAGTGTCTGCTTGGGTCAGGATTGGCTCAGGATCATCAGGGCCACAGAATGTGAATGTTGCCCTTGGTGTTGACAACCAGTGGGTCAATGGAGGACAAACGGAGGTTTCTGATAATATGTGGCATGAAATTGGAGGGTCCTTTAGAATTGAAAAGCAGCCATCAAAGGTTATGGTTTATGTCCAAGGTCCTGCTTCTGGTGTGGACTTAATGGTGGCTGGACTTCAAATTTTTCCTGTGGATAGACATGCAAGATTGAGATATTTAAAGATCCAAACAAATAAGATACGTAAACGTGATGTTATCCTGAAATTCTCTGGGCTGGACTCTGGCAGCTACGCTAACACCTCAGTGCAAGTTAGACAAACACAGAATGATTTCCCAATTGGAACATGCATCAGTAGATCAAACATTGACAATGAGGACTTTGTTGATTTCATGGTGAAGCATTTTAACTGGGCTGTGTTTGGAAACGAGTTAAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTCAATTACAAGGATGCTGATGATCTGTTAAACCTGTGTCAGAAGCACAATATACAAACTCGTGGTCATTGTATCTTCTGGGAAGTGGATGGAGTAGTTCAGGAGTGGATCAAATCACTGAACAAAAATGATTTGATGACGGCTATTCAGAACCGGCTAAACGGGCTTCTAACTCGTTACAAGGGCAAGTTTAGTCACTATGATGTCAACAATGAAATGCTGCATGGTTCATTCTTTCAAGATAGGCTAGGCAAGGATATAAGGGCTAACATGTTCAAAACTGCAAACCAACTAGACCCTTCTGCTACACTCTTTGTGAATGATTATCATGTTGAGGATGGATGTGACACCAGATCATGTCCAGATAAGTACATCCATCATATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGAATTGGAATTCAGGGCCACATAGATAGTCCAATAGGGCCTATTGTGAGTTCTTCCCTTGACAAGTTGGGTATTCTTGGTCTACCTATATGGTTCACTGAGCTTGATGTGTCTTCCATCAATGAATACGTCAGAGCAGATGATCTTGAAGTTATGCTACGTGAGGCCATGGCTCATCCTGCAGTAGAAGGCATAATGCTGTGGGGTTTTTGGGAGCTGTTTATGAGTAGGGACAATGCACACTTGGTAAATGCAGAAGGTGACATCAATGAGGCAGGGAAAAGGTTCCTAGCTCTAAAACAAGAATGGCTGTCTCACAGCCGTGGCCATGTTGATGAACAAGGTCAATACAACTTCAGAGGCTTTCATGGAACATACAATGTGCAAGTTGTGACCCCATCAAAGAAAATTTCTAAGACATTTGTGCTTGACAAAGGTGACACGCCACTGGTGCTGTCCATTGATTTATAA 2787 0.4252 MKRFSACCFTSRISKFHSHRKHNQSQIMVGNISDPSGSKGANVLLNHDFSSGLSSWHLNSCSGYVISAETGAQGGISMELGANYAVITDRKECWQGLEQDITDRISSGYTYTVLACVGVSSLSQGSSDVLATLKLEYHDSATSYLFIGRTSVNKDSWQKLEGTFSLSTMPDRVVFYLEGPAPGVDLLIRSVEINCSTPKNNTTSTTRVSVGDDNIIINPQFDDGLNNWSGRGCKIMLHDSMNDGKIVPKSGKFFASATERTQNWNGIQQDITGRVQRKLAYEVTASVRIFGNNVSTADVRATLWVQAPDLKEQYIGIANLQATDKDWVTMQGKFLLNGSPSKVVLYLEGPPPGTDILLNNLILKHAAKTPPSSPPDVKNVTFGVNIIENSTLADSTNGWFPLGNCTLSVKTGSPHIVPPMARDSLGPSELLGGRYILVTNRTQTWMGPAQIITDKVKLFLTYQVSAWVRIGSGSSGPQNVNVALGVDNQWVNGGQTEVSDNMWHEIGGSFRIEKQPSKVMVYVQGPASGVDLMVAGLQIFPVDRHARLRYLKIQTNKIRKRDVILKFSGLDSGSYANTSVQVRQTQNDFPIGTCISRSNIDNEDFVDFMVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLLNLCQKHNIQTRGHCIFWEVDGVVQEWIKSLNKNDLMTAIQNRLNGLLTRYKGKFSHYDVNNEMLHGSFFQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHIDSPIGPIVSSSLDKLGILGLPIWFTELDVSSINEYVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDEQGQYNFRGFHGTYNVQVVTPSKKISKTFVLDKGDTPLVLSIDL 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00383 928 Pfam Carbohydrate binding domain 41 182 IPR003305 GO:0016798
Phco2g00383 928 Pfam Carbohydrate binding domain 385 528 IPR003305 GO:0016798
Phco2g00383 928 Pfam Carbohydrate binding domain 213 350 IPR003305 GO:0016798
Phco2g00383 928 SUPERFAMILY Galactose-binding domain-like 40 195 IPR008979 -
Phco2g00383 928 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 576 871 IPR001000 GO:0004553|GO:0005975
Phco2g00383 928 Pfam Glycosyl hydrolase family 10 585 842 IPR001000 GO:0004553|GO:0005975
Phco2g00383 928 Gene3D - 36 195 - -
Phco2g00383 928 Gene3D - 209 366 - -
Phco2g00383 928 Gene3D - 383 540 - -
Phco2g00383 928 SUPERFAMILY (Trans)glycosidases 576 879 IPR017853 -
Phco2g00383 928 SUPERFAMILY Galactose-binding domain-like 212 366 IPR008979 -
Phco2g00383 928 SUPERFAMILY Galactose-binding domain-like 383 543 IPR008979 -
Phco2g00383 928 Gene3D Glycosidases 574 884 - -
Phco2g00383 928 PANTHER GLYCOSYL HYDROLASE 370 920 IPR044846 GO:0004553|GO:0005975
Phco2g00383 928 FunFam Endo-1,4-beta-xylanase A 577 879 - -
Phco2g00383 928 FunFam Glycosyl hydrolase family 10 protein 209 365 - -
Phco2g00383 928 SMART glyco_10 622 872 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00383 Phco-Chr2 3301540 3306144 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00383 2 3301540 3306144 Phco2g00383 2 3301540 3306144 ECH