Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00382 ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACAGGTCCAAGTCCAAGTCCAAGGCCTAATTTTCTGTACTCTTCACCTAGTGGTGGAAACCATAACCATAACCATCATCAGCATCAGCATCAGCATCATAGCCATCACCACCAGCATCATCAGTTTCCAATCAACACCTTCCATCTTCAATCGGGTGGAACGGATCATTGCTTTCAGTCTGATCAAGTGGCACCACACCCTTCTGTGAAAACCGAAGCCAGCTCTTCTCAGCTTCACGCTCCTATTTTCCACTACCCTTTAATGAGAGGAAACCTCCACAACAACAACAACACCACCACCACTATGCATCACCATCCCCAGCAACAAGGAGGAAGTCCAACGAGCTCCACTACCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCCAATCTTTTGGAGGCTTATATGGATTGCCAAAAGATAGGAGCTTCACCCGAAGTGGTGGCGCGTATGGTTGCGGCAAAGCAAGAGTTTGAGGCGCGGCAAAGATCCTCAGGTGGTTCAAGGGATTCTTCAAAAGACCCTGAACTTGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAAGAATTAACAAGGCCTATTCAAGAGGCCATGGATTTCATGCGAAGGATAGAAACTCAACTAAATATGCTATGCAATGGACCCGTCAGGATCTTCTCTGAAGATAAATGTGAAGGGGTTGGTTCATCAGAAGATGATCAAGACAACAGTGGAGGAGAAACAGAACTTCCAGAGATTGATCCGCGAGCAGAAGATCGTGAACTTAAAAACCACTTGCTGAGAAAGTACAGTGGTTACTTGAGTAGTCTTAAGCAAGAACTTTCTAAGAAGAAAAAGAAAGGGAAACTCCCCAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCCCAAAGTGCAACTCTCTACATGGATGGTCACTACATGGCTGATGGTCACTACCGTCTAGGGCCATGA 1188 0.4436 MEEYTNNNHLSENTGPSPSPRPNFLYSSPSGGNHNHNHHQHQHQHHSHHHQHHQFPINTFHLQSGGTDHCFQSDQVAPHPSVKTEASSSQLHAPIFHYPLMRGNLHNNNNTTTTMHHHPQQQGGSPTSSTTEVEAIKAKIIAHPQYSNLLEAYMDCQKIGASPEVVARMVAAKQEFEARQRSSGGSRDSSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSEDKCEGVGSSEDDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00382 395 SMART HOX_1 299 364 IPR001356 GO:0003677
Phco2g00382 395 MobiDBLite consensus disorder prediction 36 54 - -
Phco2g00382 395 Pfam Homeobox KN domain 317 356 IPR008422 GO:0003677|GO:0006355
Phco2g00382 395 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 367 - -
Phco2g00382 395 MobiDBLite consensus disorder prediction 1 54 - -
Phco2g00382 395 SUPERFAMILY Homeodomain-like 298 373 IPR009057 -
Phco2g00382 395 ProSiteProfiles ELK domain profile. 277 297 IPR005539 GO:0003677
Phco2g00382 395 ProSiteProfiles 'Homeobox' domain profile. 297 360 IPR001356 GO:0003677
Phco2g00382 395 SMART KNOX1_2 134 178 IPR005540 GO:0003677|GO:0005634
Phco2g00382 395 FunFam Homeobox protein knotted-1-like 2 302 364 - -
Phco2g00382 395 CDD homeodomain 309 361 IPR001356 GO:0003677
Phco2g00382 395 ProSitePatterns 'Homeobox' domain signature. 335 358 IPR017970 GO:0000981|GO:0006355
Phco2g00382 395 SMART ELK_2 277 298 IPR005539 GO:0003677
Phco2g00382 395 Pfam KNOX1 domain 135 177 IPR005540 GO:0003677|GO:0005634
Phco2g00382 395 SMART KNOX2_2 185 236 IPR005541 GO:0003677|GO:0005634
Phco2g00382 395 Gene3D - 302 364 - -
Phco2g00382 395 Pfam ELK domain 277 298 IPR005539 GO:0003677
Phco2g00382 395 MobiDBLite consensus disorder prediction 106 131 - -
Phco2g00382 395 Pfam KNOX2 domain 190 235 IPR005541 GO:0003677|GO:0005634
Phco2g00382 395 MobiDBLite consensus disorder prediction 1 35 - -
Phco2g00382 395 MobiDBLite consensus disorder prediction 246 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00382 Phco-Chr2 3243033 3248250 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phco2g00382 KNOX2 3.7e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00382 2 3243033 3248250 Phco2g00382 2 3243033 3248250 ECH