Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00369 ATGGGGGGTCAGGAAAATGCCATGGGGTTTCAACACGGAAATGAGAACATTCTGACTTGTCCATCTTCAGCTCTCAGTGGTGCCAATGTTAATGTTTCAGAAATGGCTATTAGTTCTGTGTCTGTGGCCAAGCATTCAGATGTAGCTAACCCTTTTCTTGCTTCTTCCGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCAATGGTTTCTCATACCGAGTTTGCCAATGCCAACTCTTCTTACCCTCTTGTTCTGGAAAACCAAGGAATAAGCAACACTTCCCACCTTGTTCAGTACATGTCTGACTCAAATCTCGTGGGCATGGTCCCCAAGGTTCACTCCTATGCAAGTAGGGGCTTCTCAGAAATGGTTGGTGCTGGCTCTTTTGGCCAACTTGGGTCTGGTGATGTGGCTAACACAGGGTATCCACCACATTATAATCCGATCAAGGAGGCTCAGATTAATGGTGAACAATCTCAGGTTGAGGACTCAATTCCTGAAGAGGAAGCACCAGGATCTGCTCCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCTACCTTCAGCCCAAATAAGAATGCTGAGAGTGAAACTATGAAAGATTCTCCTGGGAGGGCCTGTGATGGTCCAAAAGAACATGAAAAGAAGCCAAAAGTTGAGCAGAACAATAGTGCAGATTTGCGTGGCAAGCAATCAGCGAAGCAAGCTAAAGACAACAGTTCTCAAAGTGGAGAAGCTCCTAAAGAAAACTTCATTCACGTGAGAGCTAGAAGAGGACAAGCCACAAATAGCCACAGTCTAGCAGAAAGAGTGAGGAGAGAAAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGTTGCAACAAGATAACTGGCAAAGCCGTAATGCTGGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTAAACTTTGATGTAGACAGGATTCTATCCAAGGATATTCTTCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCAGTGGAAATTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGAATGTTTTGGACCATGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG 1290 0.4465 MGGQENAMGFQHGNENILTCPSSALSGANVNVSEMAISSVSVAKHSDVANPFLASSAWDPLVSLSQAQTFGGSSMVSHTEFANANSSYPLVLENQGISNTSHLVQYMSDSNLVGMVPKVHSYASRGFSEMVGAGSFGQLGSGDVANTGYPPHYNPIKEAQINGEQSQVEDSIPEEEAPGSAPSGNRRKRGLDHNSTFSPNKNAESETMKDSPGRACDGPKEHEKKPKVEQNNSADLRGKQSAKQAKDNSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIGHGIGAYGPGINSSHTFPSGNFHGTLAGMPSTSSQFPPLPQNVLDHEFQSFYGIGYDSNTALDNLGPNGRLKTEL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00369 429 MobiDBLite consensus disorder prediction 233 256 - -
Phco2g00369 429 FunFam Basic helix-loop-helix transcription factor 266 338 - -
Phco2g00369 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 319 IPR011598 GO:0046983
Phco2g00369 429 CDD bHLH_AtBPE_like 259 344 - -
Phco2g00369 429 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 164 375 IPR024097 GO:0006355
Phco2g00369 429 SMART finulus 275 325 IPR011598 GO:0046983
Phco2g00369 429 MobiDBLite consensus disorder prediction 163 259 - -
Phco2g00369 429 Pfam Helix-loop-helix DNA-binding domain 272 320 IPR011598 GO:0046983
Phco2g00369 429 MobiDBLite consensus disorder prediction 207 232 - -
Phco2g00369 429 Gene3D - 266 340 IPR036638 GO:0046983
Phco2g00369 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 337 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00369 Phco-Chr2 3111130 3113568 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g00369 HLH 4.6e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00369 2 3111130 3113568 Phco2g00369 2 3111130 3113568 ECH