Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00368 ATGAAGTCCATGAATGATGGCAACACTGATGATGGGAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAAATTACTTCTTCTGCTGACCCTCCTCATCACCATCATCATCACTACTATCATCACCCTCAGGTTTCTGCCGCTGCAGCACCTTGCAACACTGTTCCAACAAACTTCTATACCTCACACCTTAACACCTCAGGAATCTGCTATGGTGTTGGAGAAAACAGTGCTTTTCACCCTCCCTTGGCCATGATGCCCCTCAAGTCAGATGGGTCACTTTGCATTATGGAAGCTTTCACCAGATCACAAACCCAAGTGATGGTGCCAACTACATCCCCAAAACTCGAGGACTTCCTAGGTGGTGCAAGTATGGGAGCTCAAGACTATGGAGGACATGAAAGAGAAGCAATGGCTCTTAGCCTAGACAGCATCTACTATAGTAGCCAGAATGCGGAACCTGAAGCCAACAGAGACCATCCTTCTTCTTTGGGCCTTCTTTCTGACCCCTTCAGGCAACAAACCCATCCATATTACTCGGGGCTTGGGATTTACCAAGTGGAGGAGGAAGCCAAGCAACCCAACGTGACAGTTTGCAGCTCCCAAATGCCTCAAGTGGTGGAAGAAGGCATTGCATGCTTCAAAAACTGGGTGCCCCAAAGGGGATATTCTTCCTCTCAGCAGAATCTGGAGCAGCAGCATCCAGTGAATAACAGTAGCGGCATGGGGGAGAATCACGGTGCTTCTGGGAATGTTGGTGCTGGTGTTGGTTGTGGGGAGTTACAATCTTTGAGCTTGTCTATGAGTCCTGGTTCTCAATCTAGCTGTGTCACAGTTCCAACTCAGATCTCATCTTCTGGAACTGAATCAGTAGTTGGGGATGCCAAAAAGAGAGGTTCTGCTAAGCTTGGCCAGAAGCAACCTGTGCATAGGAAATCCATTGACACATTCGGCCAGAGAACTTCTCAGTATAGAGGTGTGACAAGGCATCGATGGACTGGAAGATATGAAGCACATTTGTGGGATAATAGCTGCAAGAAGGAAGGGCAAACCAGGAAAGGACGACAAGTTTATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCATATGATCTTGCGGCTCTGAAGTATTGGGGACCTTCGACGCACATAAACTTCCCGCTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAATATGAGCAGGCAGGAATATGTGGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCCTCAATGTACAGAGGAGTGACAAGACACCATCAACATGGCAGATGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTCGGGACATTCAGTACTCAAGAGGAAGCAGCTGAAGCATATGACGTAGCTGCAATCAAGTTTCGTGGGGTGAATGCTGTCACCAACTTTGACATCTCAAGATACGATGTTGAGAGGATCATGGCCAGCAACACCCTTCTTGCAGGAGAGTTGGCAAGAAGAAACAAGGAAAGTGAGCCAAGAACTGAGGCCATAGAGTACAACGTTGTGTCAAGCCAACAAGCCATAAGCAGCAGCAGGGAAGAAGCTGAGACTGTGAACAACAATGACAATAATGAGAAGGGATCATCAGATTGGAAGATGGGTTTGTATCATCAACCACAGTCAAACAACAACTGTGACATGAAAACCATGAAGTGTGGAAATTATAGAGGTTCTGCTTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCAGGCCATGCTAGAGGAGTCTACTAAGATAGGCACTCATTTTTCAAACCCCTCTTCGCTGGTGACCAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGACAAAACGGGTCCCACTGTGCTCTTTCCAAAGCCTCCGGTGGGGTCAAAGGTTGTCACTAGCCCTATTGCTAATGGTGTAAGTGTTGGCTCTTGGTTTCCCTCTCAAATGAGGCCAGTCGCAATGTCTCACTTGCCAGTTTTTGCTGCGTGGAGTGATACCTAG 2064 0.4709 MKSMNDGNTDDGNNHNWLGFSLSPHMKMEITSSADPPHHHHHHYYHHPQVSAAAAPCNTVPTNFYTSHLNTSGICYGVGENSAFHPPLAMMPLKSDGSLCIMEAFTRSQTQVMVPTTSPKLEDFLGGASMGAQDYGGHEREAMALSLDSIYYSSQNAEPEANRDHPSSLGLLSDPFRQQTHPYYSGLGIYQVEEEAKQPNVTVCSSQMPQVVEEGIACFKNWVPQRGYSSSQQNLEQQHPVNNSSGMGENHGASGNVGAGVGCGELQSLSLSMSPGSQSSCVTVPTQISSSGTESVVGDAKKRGSAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKESEPRTEAIEYNVVSSQQAISSSREEAETVNNNDNNEKGSSDWKMGLYHQPQSNNNCDMKTMKCGNYRGSAFSVSLQDLIGIDSVGSSQAMLEESTKIGTHFSNPSSLVTSLSSSREGSPDKTGPTVLFPKPPVGSKVVTSPIANGVSVGSWFPSQMRPVAMSHLPVFAAWSDT 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00368 687 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 115 564 - -
Phco2g00368 687 ProSiteProfiles AP2/ERF domain profile. 328 394 IPR001471 GO:0003700|GO:0006355
Phco2g00368 687 FunFam AP2-like ethylene-responsive transcription factor 429 490 - -
Phco2g00368 687 MobiDBLite consensus disorder prediction 533 555 - -
Phco2g00368 687 FunFam AP2-like ethylene-responsive transcription factor ANT 327 396 - -
Phco2g00368 687 PRINTS Ethylene responsive element binding protein signature 329 340 IPR001471 GO:0003700|GO:0006355
Phco2g00368 687 PRINTS Ethylene responsive element binding protein signature 470 490 IPR001471 GO:0003700|GO:0006355
Phco2g00368 687 CDD AP2 429 490 IPR001471 GO:0003700|GO:0006355
Phco2g00368 687 Gene3D AP2/ERF domain 430 490 IPR036955 GO:0003700|GO:0006355
Phco2g00368 687 Gene3D AP2/ERF domain 327 396 IPR036955 GO:0003700|GO:0006355
Phco2g00368 687 CDD AP2 327 394 IPR001471 GO:0003700|GO:0006355
Phco2g00368 687 SMART rav1_2 430 494 IPR001471 GO:0003700|GO:0006355
Phco2g00368 687 SMART rav1_2 328 400 IPR001471 GO:0003700|GO:0006355
Phco2g00368 687 SUPERFAMILY DNA-binding domain 327 396 IPR016177 GO:0003677
Phco2g00368 687 MobiDBLite consensus disorder prediction 229 251 - -
Phco2g00368 687 Pfam AP2 domain 328 386 IPR001471 GO:0003700|GO:0006355
Phco2g00368 687 Pfam AP2 domain 431 480 IPR001471 GO:0003700|GO:0006355
Phco2g00368 687 MobiDBLite consensus disorder prediction 616 641 - -
Phco2g00368 687 MobiDBLite consensus disorder prediction 616 634 - -
Phco2g00368 687 MobiDBLite consensus disorder prediction 292 316 - -
Phco2g00368 687 SUPERFAMILY DNA-binding domain 429 490 IPR016177 GO:0003677
Phco2g00368 687 ProSiteProfiles AP2/ERF domain profile. 430 488 IPR001471 GO:0003700|GO:0006355
Phco2g00368 687 MobiDBLite consensus disorder prediction 229 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00368 Phco-Chr2 3075915 3079627 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Phco2g00368 AP2 1.6e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00368 2 3075915 3079627 Phco2g00368 2 3075915 3079627 ECH
Phco2g00368 2 3075915 3079627 Phco7g00550 7 4068360 4071478 PCT