Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00365 ATGGATCTTGGGGTGGTGGGTTTGGAGGGGTTGGTGGGTTCAGACAATAGTTGCGCCTTTGGTTCTTCTCTTGCTTCAGATCCTGAGACAAAACACAAGTGGTACGGATCTGGGGTGCTCAAGCAAGAGAGATCTGGCACAGCAAGTGAAGATGAGTGGAGGGCTTCAAAAGTGCCTAAAACTGATGACAACATGTCTGCTGCATCCAAAGCAATGCTCTTTCACCAGAGGAACTCTCTGCTGAGATCTAATGTCACGCTTTTCTCTGAGGGCCACAACCAACCACAAATGCTGAGCTTCTCTTCACCAAAATCAGAGCCTTTGCTGGTGGACAAGGCCTCCTTAAATGCCACATTGCCTTTTTCTTACCACCAATTGTCTAGTTACAGCAGAAATACAGGTTACAGTTCGGGAAGCATAAGCATGCATGGGGCTTTGTCTGGTGTGAGAGGGCCATTCACGCCTTCACAGTGGATGGAACTTGAACACCAAGCTTTGATCTACAAGTACATCACAGCAAACGTGCCTGTACCAACTCATCTTCTCATACCCATCAGAAAAGCACTCGATTCTGCTGCCTTCTGCAACTTTTCAACCGGACTCCTCAGACCCAACACATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGGAGGTGTAGGAGAACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTAGTTGATCAGAAGTATTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTCACCACCACTACCACCACAACAACCACCACTACTCCTCCTAATGCTTCCTCAAACTCCATTGTGGTGCCCGGCAACAACAACACCACCTTTGCACACAACAATGTGCACCACCCTCTTCCATCTCATTCCTCTCCAGCCAACACCATCAACAGGATGTTTATGAGTAACAAAGAGAACAATAACAACGCTAGTGAGAGGATGCAAGATGGCCCTGCACTTCCCGTGGTGCCTCCAACTCTTGAGCTGAAACCAAAGGACCCTTTCATGATTCATAAACACCAACTCCCATATGATGAATCATCCTCAAGGAACAACAATGAGTTTGGGCTTGTCACTTCTGATTCCTTGCTCAACCCTTCACAGAAGAGAAGCTTTGGTTCATCATCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCCCTCAGGCACTTCATTGACGACTCTCCCAAACCACAGTCTCATCATCACCATCATCGTTCTTCTGTTTGGCCTGAACTTGACAACATGCAGTCAGATAGGACTCAGTTATCAATCTCCATACCCATATCTTCCTCAGATTTCATGTCATTCGCTACCTCCTCACCCTCCAATGAGAAACTCACATTGTCACCACTAAGGCTTTCAAGGGAGTTAGACCCCATTCAAATGGGGTTGGGAGTGGGAAGTGGTGCTCCCAATGAATCAAACACTAGGCAAGCCAATTGGATTCCAATCACTTGGGAGAGTTCTATGGGTGGTCCTCTTGGTGAGGTTTTAAACCTTAGTAGTAATAACAACAGCAATGGAAGTGATCACTGTGGCAAGAACACTTCTGCTCTCAACCTCATGAAAGATGGGTGGGACAATAGTCCTCCCCTAGGGTCATCCCCCAACGGGGTGTTGCAAAAAACAGCATTTGGATCACTTTCCAATAGCAGTGCTGGAAGCAGTCCTAGGGCAGAGAACAACAACAACAAAGAAAGTGCCAGTGCTACCACATTGTGCAATGCCTTGTGA 1815 0.4777 MDLGVVGLEGLVGSDNSCAFGSSLASDPETKHKWYGSGVLKQERSGTASEDEWRASKVPKTDDNMSAASKAMLFHQRNSLLRSNVTLFSEGHNQPQMLSFSSPKSEPLLVDKASLNATLPFSYHQLSSYSRNTGYSSGSISMHGALSGVRGPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRKALDSAAFCNFSTGLLRPNTLGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHALTTTTTTTTTTTPPNASSNSIVVPGNNNTTFAHNNVHHPLPSHSSPANTINRMFMSNKENNNNASERMQDGPALPVVPPTLELKPKDPFMIHKHQLPYDESSSRNNNEFGLVTSDSLLNPSQKRSFGSSSSQKDDSESQQQHSLRHFIDDSPKPQSHHHHHRSSVWPELDNMQSDRTQLSISIPISSSDFMSFATSSPSNEKLTLSPLRLSRELDPIQMGLGVGSGAPNESNTRQANWIPITWESSMGGPLGEVLNLSSNNNSNGSDHCGKNTSALNLMKDGWDNSPPLGSSPNGVLQKTAFGSLSNSSAGSSPRAENNNNKESASATTLCNAL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00365 604 SMART QLQ_2 151 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco2g00365 604 Pfam WRC 222 264 IPR014977 -
Phco2g00365 604 MobiDBLite consensus disorder prediction 45 59 - -
Phco2g00365 604 MobiDBLite consensus disorder prediction 366 438 - -
Phco2g00365 604 Pfam QLQ 152 186 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco2g00365 604 MobiDBLite consensus disorder prediction 548 604 - -
Phco2g00365 604 MobiDBLite consensus disorder prediction 370 407 - -
Phco2g00365 604 MobiDBLite consensus disorder prediction 557 604 - -
Phco2g00365 604 MobiDBLite consensus disorder prediction 331 351 - -
Phco2g00365 604 PANTHER GROWTH-REGULATING FACTOR 5 90 466 IPR031137 GO:0005634|GO:0006351|GO:0032502
Phco2g00365 604 ProSiteProfiles QLQ domain profile. 152 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco2g00365 604 MobiDBLite consensus disorder prediction 41 61 - -
Phco2g00365 604 MobiDBLite consensus disorder prediction 408 436 - -
Phco2g00365 604 MobiDBLite consensus disorder prediction 251 299 - -
Phco2g00365 604 ProSiteProfiles WRC domain profile. 221 265 IPR014977 -
Phco2g00365 604 MobiDBLite consensus disorder prediction 266 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00365 Phco-Chr2 3014562 3018444 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Phco2g00365 WRC 5.6e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00365 2 3014562 3018444 Phco2g00365 2 3014562 3018444 ECH