Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00354 ATGGCCAATAATTCTCAGCCCTCCAGCATGCAGTTTCGGCCAGTCATTCAAGCCCAGCAAGGGCAACCATATGTTCCAATGAATTCACAACAATTTGGACCTGCAGGACATGCTATTCCTTCTTCAAATGCGGGAATGCCTGTCATTCAAGGTCAACAGTTGCAATATTCTCAACCAATGCAGCAGTTGACTCCAAGGCCAATGCAGCCTGGTCATCTTGCTCCTTCATCACAACCTATACCCATGCCATATATTCAGACAAACAGACCAATGTCATCCATTCCACCTCATTCACAATCTGTTCCCCCTTTAAGCAATCATATGCCTGGCTTACCTGTTTCTGGAGCAGCTCCACATTCTTCATATACTTTCACACCATCGTATGGTCAGCAGCATGATAATGCAAATGCATTGGCCCAATACCAGCATCCACCTCAAATGCTTGCTCCTCCTGGTGGTCAACCTTGGCTGTTGTCTGCATCTCAGAGTGTTGCACCTTCTACATCTGTGCAGCCGGCTGGGCTGCAATCATCTGGAGCTACATTGACTGATGCGGTAACTAATGCTACTAACCAGCAATCCTTATCTGATTGGCAAGAGCATACTTCTGGAGATGGGAGAAGATATTACTACAACAAGAGGACAAGGCAATCAAGTTGGGAGAAACCTTTGGAATTGATGTCACCTATTGAGAGAGCTGATGCATCGACTGTTTGGAAAGAATTCACTTCTTCAGATGGAAAAAAGTATTATTACAATAAGGTTACTCAACAATCAACGTGGTCGATACCAGAGGAACTTCAGTTGGCTCGTGAGCAGGCACAAAAAGCTGCAAACCAGGGAATGCAGTCAGAAACAAGTGATACACCGAATGCTGCTGTCTCATCAATAGCCACATCAACGGCAGCTAATGCAGCTAGCTTGAACCCTTTGACCTCAAATGGGCTTGCTTCCAGCCCATCTTCTGTCACACCAATTGCATCAACCGATTCTCAGCAGTTGGTTTCTGGATTATTTGGCACCCCTGTTTCACACTCTACAGTTACCTCAAGCACAACAGGTGTTGAACCTAGCAGTGTGGGAACTACAAGTGCTGCACCTATACTAGTCGCAGGAGGCTCAGGACTATCCGAGAACTCACCTCAACTATCCAAAATGCCACCCATTGTTGAAAATCAAGCATCTCAAGATTTTGCTTCTGCGAATGGATCTTCTCCTCAAGATATTGAGGAAGCTAAAAAAGCATTGGCTGAGGTTGGGAAAAATAATGTGATTCCACCTGAGGAGAAAACCAATGATGATGAAACCTTGGTATATGCAAATAAGCTGGAAGCAAAAAATGCATTTAAAGTGCTTCTGGAATCTGTGAACGTTCAGTCTGATTGGACCTGGGAACAGGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTGAAAACACTTGGTGAGCGAAAACAAGCTTTTAATGAGTATTTGGGCCAAAGGAAGAAGCTGGAGGCTGAAGAGAGACGCATGAAGCAGAAAAGAGCCCGCGAAGAATTCACAAAGATGTTGGAAGAGTGCAAGGAACTTACATCCTCCATGAGATGGAGCAAAGCCATTAGTATGTTTGAAAATGATGAACGATTTAATGCTGTTGAAAGACCAAGAGACCGAGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGGAAGGAGAAGGAAAATGCGGCGGAGGAGCACCGGCGGAATATAGCAGAATATAGAAAATTTCTAGAGTCTTGTGATTATGTGAAGGTGAATAGTCATTGGCGTAAAATCCAAGATCGGTTAGAGGACGACGATAGATACTTGCGACTTGAAAAAATTGATCGCTTGCTAGTTTTTCAGGACTATATTCGGGACTTGGAGAAAGAAGAGGAGGAACAAAGAAGAATACAGAAGGATCGAGTCCGACGGGGTGAAAGGAAAAACCGTGATGCTTTTCGCAAGTTGCTTGAAGAACATGTTGCTACTGGAATTCTTACTGCTAAAACTCAATGGCGAGAATATTGCTTGAAGGTCAGGGATTTACCTCAATATCAAGCTGTTGCATCAAATACATTGGGTTCCACCCCAAAGGATTTGTTTGAGCTTGTTGCAGAGGATCTTGAGAAACAGTATCATGAAGACAAGACACTCATAAAAGATACAATTAAGTCAGGCAAGATAATTGTAGTGACTACATCAGTATTTGAGGAGTTTAAGGCTGCTGTGTTGGAAGATGTTGCATGCCAAACAATATCTGACATCAATTTAAAGCTTATATTTGAGGAGTTGTTAGAGAGAGCTAAAGAGAAGGAGGAGAAAGAAGCCAAGAAGCGCCAACGCCTTGCTGATGACTTTACTAACCTGTTATACACATTCAAGGATATTACTACTTCCTCAAAATGGGAGGATTGCAAGTCACTTTTTGAGGAGACTCAAGAGTACAGGTCAATTGGGGACGAAAGCTATAGTAGAGAAATTTTTGAGGAATACATCACATACTTGAAGGAAAAAGCTAAAGAGAAGGAACGTAAGCGTGAAGAGGAGAAGGTCAAAAAGGAGAAAGAAAGGGAAGAGAAACGGAAGGAGAAGGAGAAAAAAGAAAAAGATAGAGAACGCGAAAAGGATAAGTCAAAGGAACGCCATAGGAAGGATGAAACAGATAGTGATAACCAAGACATGGCTGAAGTCCATGGTTACAAAGAGGAGAAGAAAAAAGAAAAGGATAAGGAAAGGAAGCATCGGAAAAGGCATCAGAGCAGCATAGATGACGTGGATTCTGAAAAGGAAGACAAGGAAGAATCTAAAAAATCACGAAGGCATGGCAGTGAACGCAAGAAGTCTAGGAAGCATGCAAACTCTCCTGAATCAGACAATGAAAACCGGCACAGACGACACAAGAGGGAGCACTGGGATGTATCTAGGAAAACTGGGGGGCATGAGGAACTTGAAGACGGAGAGCTCGGCGACGATGTTGAAAACTAA 3000 0.43 MANNSQPSSMQFRPVIQAQQGQPYVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHLAPSSQPIPMPYIQTNRPMSSIPPHSQSVPPLSNHMPGLPVSGAAPHSSYTFTPSYGQQHDNANALAQYQHPPQMLAPPGGQPWLLSASQSVAPSTSVQPAGLQSSGATLTDAVTNATNQQSLSDWQEHTSGDGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAANQGMQSETSDTPNAAVSSIATSTAANAASLNPLTSNGLASSPSSVTPIASTDSQQLVSGLFGTPVSHSTVTSSTTGVEPSSVGTTSAAPILVAGGSGLSENSPQLSKMPPIVENQASQDFASANGSSPQDIEEAKKALAEVGKNNVIPPEEKTNDDETLVYANKLEAKNAFKVLLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQRRIQKDRVRRGERKNRDAFRKLLEEHVATGILTAKTQWREYCLKVRDLPQYQAVASNTLGSTPKDLFELVAEDLEKQYHEDKTLIKDTIKSGKIIVVTTSVFEEFKAAVLEDVACQTISDINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKVKKEKEREEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMAEVHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEDKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKREHWDVSRKTGGHEELEDGELGDDVEN 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00354 999 Gene3D FF domain 779 852 IPR036517 -
Phco2g00354 999 ProSiteProfiles FF domain profile. 509 564 IPR002713 -
Phco2g00354 999 ProSiteProfiles FF domain profile. 442 496 IPR002713 -
Phco2g00354 999 Coils Coil 625 645 - -
Phco2g00354 999 Pfam WW domain 196 223 IPR001202 GO:0005515
Phco2g00354 999 Pfam WW domain 239 264 IPR001202 GO:0005515
Phco2g00354 999 MobiDBLite consensus disorder prediction 954 988 - -
Phco2g00354 999 SMART ww_5 234 266 IPR001202 GO:0005515
Phco2g00354 999 SMART ww_5 193 225 IPR001202 GO:0005515
Phco2g00354 999 MobiDBLite consensus disorder prediction 848 999 - -
Phco2g00354 999 SUPERFAMILY FF domain 503 571 IPR036517 -
Phco2g00354 999 ProSitePatterns WW/rsp5/WWP domain signature. 239 264 IPR001202 GO:0005515
Phco2g00354 999 MobiDBLite consensus disorder prediction 921 945 - -
Phco2g00354 999 SUPERFAMILY FF domain 569 638 IPR036517 -
Phco2g00354 999 SMART FF_2 442 496 IPR002713 -
Phco2g00354 999 SMART FF_2 577 631 IPR002713 -
Phco2g00354 999 SMART FF_2 651 711 IPR002713 -
Phco2g00354 999 SMART FF_2 784 839 IPR002713 -
Phco2g00354 999 SMART FF_2 509 564 IPR002713 -
Phco2g00354 999 CDD SP5_N 63 174 - -
Phco2g00354 999 CDD WW 196 225 IPR001202 GO:0005515
Phco2g00354 999 FunFam Pre-mRNA-processing protein 40A 498 571 - -
Phco2g00354 999 ProSiteProfiles WW/rsp5/WWP domain profile. 196 225 IPR001202 GO:0005515
Phco2g00354 999 SUPERFAMILY WW domain 238 271 IPR036020 GO:0005515
Phco2g00354 999 ProSiteProfiles FF domain profile. 577 631 IPR002713 -
Phco2g00354 999 MobiDBLite consensus disorder prediction 848 914 - -
Phco2g00354 999 FunFam Pre-mRNA-processing protein 40A 642 723 - -
Phco2g00354 999 Coils Coil 558 587 - -
Phco2g00354 999 Pfam FF domain 580 628 IPR002713 -
Phco2g00354 999 Pfam FF domain 511 561 IPR002713 -
Phco2g00354 999 Pfam FF domain 444 493 IPR002713 -
Phco2g00354 999 Pfam FF domain 789 836 IPR002713 -
Phco2g00354 999 Pfam FF domain 653 707 IPR002713 -
Phco2g00354 999 Gene3D FF domain 573 641 IPR036517 -
Phco2g00354 999 Gene3D FF domain 498 572 IPR036517 -
Phco2g00354 999 Gene3D FF domain 642 723 IPR036517 -
Phco2g00354 999 FunFam Pre-mRNA-processing protein 40A 778 851 - -
Phco2g00354 999 SUPERFAMILY FF domain 644 719 IPR036517 -
Phco2g00354 999 SUPERFAMILY WW domain 197 231 IPR036020 GO:0005515
Phco2g00354 999 FunFam pre-mRNA-processing protein 40A isoform X1 441 496 - -
Phco2g00354 999 CDD WW 239 266 IPR001202 GO:0005515
Phco2g00354 999 ProSiteProfiles FF domain profile. 649 712 IPR002713 -
Phco2g00354 999 Coils Coil 766 790 - -
Phco2g00354 999 SUPERFAMILY FF domain 777 846 IPR036517 -
Phco2g00354 999 ProSitePatterns WW/rsp5/WWP domain signature. 198 223 IPR001202 GO:0005515
Phco2g00354 999 SUPERFAMILY FF domain 434 496 IPR036517 -
Phco2g00354 999 Gene3D FF domain 442 497 IPR036517 -
Phco2g00354 999 MobiDBLite consensus disorder prediction 272 293 - -
Phco2g00354 999 Coils Coil 490 513 - -
Phco2g00354 999 FunFam Pre-mRNA-processing protein 40A 572 640 - -
Phco2g00354 999 Gene3D - 191 234 - -
Phco2g00354 999 Gene3D - 235 279 - -
Phco2g00354 999 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 193 786 IPR039726 GO:0045292
Phco2g00354 999 MobiDBLite consensus disorder prediction 273 293 - -
Phco2g00354 999 Coils Coil 837 886 - -
Phco2g00354 999 ProSiteProfiles WW/rsp5/WWP domain profile. 233 266 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00354 Phco-Chr2 2930690 2944523 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00354 2 2930690 2944523 Phco2g00354 2 2930690 2944523 ECH