Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00481 ATGGGCAACCTCTTTGGCAAAAATAAAAAGCATAGCACTCATAGTTCAAGCCATGATAAAGGAAGAGGAGGAAGAATCTTCACTAACGTCACCACAAGAGCTTTACCACCCAATATTCCATCGCAAATATCTTCGTCGTTGCCACCACCAATCTTATATCCATCTCTCGAACTACCTTCGCCGCCACCACCACCACCGCAGCGATCGCAATCCATTTCCAAGAAACCAAGTTTTGTGAGAGTTGACTCCAAACAAAGCTCTTCAATCATGGACAAGAAGCAATCTGCAGCGAAGAAGTATGCTCTTATCCGTGACAACTTCTCTACCCTTGAACAGGTGACAACAGCCTTGAGGAAAGAAGGATTAGAATCATCAAATCTCATCCTTGGAATTGATTTTACAAAGAGTAATGAATGGACTGGCAGAATCTCATTCAATAAAAGAAGCCTGCATGCTATTGGAACTACACCTAATCCTTATGAGAAGGCTATCTCTATAATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTTATTCCATGCTTTGGCTTTGGTGATGCTACTACCCATGATGAAGAAGTGTTTAGCTTTCACACTGATCATTCACCTTGCCATGGCTTTGAGGAAGTCTTGGCTTGCTACCAGAAAATAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCGGTGATTGAAGCTGCCATAGACATAGTTGAGAAAAGCCGTGGCCAATTCCATGTGTTGGTTATAGTTGCTGATGGCCAGGTTACAAGAAGTGTCAATACTGGAGATGGAGAACTAAGTCCTCAGGAAGAAAAGACAATTAAAGCAATCGTTGATGCAAGTGCATATCCTCTTGCAATAATTCTAGTAGGAGTTGGTGACGGGCCTTGGGAAGACATGAGAAAGTTTGATGACAGGCTACCTGCACGCGATTATGACAATTTTCAGTTTGTTAATTTCACGGAAATAATGTCGAGAAACACAAGCCCCTCTGAGAAAGAAGCAGCTTTTGCTCTTGCTGCTCTCATGGAGATCCCCTTCCAATATAAAGCAACCATGGAATTTGGAATACTCGGACGTGTGAGAGGAAGAGCAAAGAGGATAGTTCCAAAAGCTCCTCCTCTACCCTATTCTAGGCCTGCACCCTCACCAGCTCGTCTTCCCAGCACTGCACCACCATCCTCCATTGATGACCAAAACCAATCGGTTTGCCCTGTTTGTTTGACCAATCCAAGAGACTTGGCCTTTGGGTGTGGACACTTGACTTGCAGGGAGTGTGGATATAAGTTAACTAATTGTCCGATGTGCCGAGAGAGGATCAATACTCGTCTTAGGGTGTACAGCGGGTGA 1362 0.4398 MGNLFGKNKKHSTHSSSHDKGRGGRIFTNVTTRALPPNIPSQISSSLPPPILYPSLELPSPPPPPPQRSQSISKKPSFVRVDSKQSSSIMDKKQSAAKKYALIRDNFSTLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNKRSLHAIGTTPNPYEKAISIIGKTLAPFDDDNFIPCFGFGDATTHDEEVFSFHTDHSPCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKSRGQFHVLVIVADGQVTRSVNTGDGELSPQEEKTIKAIVDASAYPLAIILVGVGDGPWEDMRKFDDRLPARDYDNFQFVNFTEIMSRNTSPSEKEAAFALAALMEIPFQYKATMEFGILGRVRGRAKRIVPKAPPLPYSRPAPSPARLPSTAPPSSIDDQNQSVCPVCLTNPRDLAFGCGHLTCRECGYKLTNCPMCRERINTRLRVYSG 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00481 453 MobiDBLite consensus disorder prediction 52 70 - -
Phco10g00481 453 MobiDBLite consensus disorder prediction 376 403 - -
Phco10g00481 453 SUPERFAMILY RING/U-box 401 447 - -
Phco10g00481 453 SUPERFAMILY vWA-like 125 308 IPR036465 -
Phco10g00481 453 PANTHER COPINE FAMILY PROTEIN 1 70 429 - -
Phco10g00481 453 MobiDBLite consensus disorder prediction 71 92 - -
Phco10g00481 453 MobiDBLite consensus disorder prediction 377 393 - -
Phco10g00481 453 Pfam Copine 149 361 IPR010734 -
Phco10g00481 453 Pfam Zinc finger, C3HC4 type (RING finger) 405 445 - -
Phco10g00481 453 SMART VWA_4 124 326 IPR002035 -
Phco10g00481 453 MobiDBLite consensus disorder prediction 31 49 - -
Phco10g00481 453 ProSiteProfiles Zinc finger RING-type profile. 408 441 IPR001841 -
Phco10g00481 453 MobiDBLite consensus disorder prediction 1 92 - -
Phco10g00481 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 452 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00481 Phco-Chr10 4697082 4712898 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00481 10 4697082 4712898 Phco10g00481 10 4697082 4712898 ECH
Phco10g00481 10 4697082 4712898 Phco9g01968 9 44556176 44567244 PCT