Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00394 ATGAGAACTAATACTCCTTCTCTGCTCTGTCTTCTATCTCTTGCTATTGCTACCATTTTTGGCAGTGGCACTGCAACTGCAACTCCAAGTGTGAAGCCAAGCCACTATGCTTCAACATTCAACAGGACCCTTTTTCCTTCCACTTTTATCTTTGGAATAGGTTCTTCTGCTTATCAGGCAGAAGGAGCAACAAATGTAGATGGCAGAGGAGCTAGTATTTGGGACACCTTCACTCAACAGCATCCTGAAAAAATTTGGGATCATAGCACTGGTGATGTTGGAGCTGATTTTTATCATTGCTACAAGAGTGACATAAAATTGGTGAAAGAAATTGGGATAGACTCCATCAGATTCTCCATCTCTTGGACAAGAATATTCCCCAAAGGCAAAGGAGCTGTTAATCACTTGGGTGTTCAATTCTACAATGATCTCATCAATCAGATTATATCAAATGGCTTAATACCTTTTGTCACTCTTTTCCATTGGGACTTCCCACAAACTCTTGAAGATGAGTATGGGGGATTTCGTAGCCATAAAGTAGTGGAGGATTTTCATAGATATGCTGACTTTTGCTACAAGACCTTCGGAGATCGAGTGAAACATTGGGTGACTCTGAATGAACCCTTATCATATAGTCTCAATGGTTACAGTGATGGCACCTTTGCACCAGGTAGATGTTCTAAGTATGCTGGCAACTGCATTGATGGTGACTCAGCCACTGAACCCTACATCGTTGGACACAACCTATTACTTGCTCATGAGACTGCTGCCACATTGTACAAGACAAAATACCAGGCTCGTCAAAAGGGACAAATTGGGATCACCTTACCGACTCACTACTTTTTGCCCAAATCTAACACTGCTGCTGACCAGGGGGCTGCAAATAGAGCTCTAGACTTTTTCTTTGGCTGGTATGCTCATCCACTTATCTATGGTGACTATCCAGAGAGTATGAAATGTTCAGTGGGTGCAAGACTTGCCCAATTCACAAAACCTCAATCTGAAGGCCTCAGAAAATCGACTGATTTTCTCGGTGTGAATTACTACACTACATATTATGCAGAAAATGCTGCACCTGTCATCACCAACAAGACCTTCTACACAGATATACTAGCAAATCCAACTACGGAAAAGAATGGTGTACCTATTGGAACCCCGACTATTTTGGATTGGCTGTTTATATATCCGAAGGGAATTCACCATCTTATGCTATACATAAGGGATAAATACAAGAATCCAAATATTTACATCACTGAAAATGGCGTTGCTGAAGCAAGGAATGATTCAATAGCCGTGGATGAAGCCCGCAAGGATGGTGTCAGGATTAGATACCTTATTAGCCATCTTCATTTCCTTCTTCAATCGATCAAGGAAGGTGTTAATGTGAAGGGCTACTATGCATGGTCTTTTTCAGACAGCTTTGAATGGGATGCTGGTTATACAGTTCGATTTGGACAGATATATGTGGATTACAAGAACAATTTGAAAAGATATCTAAAGTTCTCTTCTCTTTGGCTGAAAAAATTCCTTCTCAACTGA 1539 0.41 MRTNTPSLLCLLSLAIATIFGSGTATATPSVKPSHYASTFNRTLFPSTFIFGIGSSAYQAEGATNVDGRGASIWDTFTQQHPEKIWDHSTGDVGADFYHCYKSDIKLVKEIGIDSIRFSISWTRIFPKGKGAVNHLGVQFYNDLINQIISNGLIPFVTLFHWDFPQTLEDEYGGFRSHKVVEDFHRYADFCYKTFGDRVKHWVTLNEPLSYSLNGYSDGTFAPGRCSKYAGNCIDGDSATEPYIVGHNLLLAHETAATLYKTKYQARQKGQIGITLPTHYFLPKSNTAADQGAANRALDFFFGWYAHPLIYGDYPESMKCSVGARLAQFTKPQSEGLRKSTDFLGVNYYTTYYAENAAPVITNKTFYTDILANPTTEKNGVPIGTPTILDWLFIYPKGIHHLMLYIRDKYKNPNIYITENGVAEARNDSIAVDEARKDGVRIRYLISHLHFLLQSIKEGVNVKGYYAWSFSDSFEWDAGYTVRFGQIYVDYKNNLKRYLKFSSLWLKKFLLN 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00394 512 PANTHER GLYCOSYL HYDROLASE 45 510 IPR001360 GO:0004553|GO:0005975
Phco10g00394 512 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 49 63 IPR033132 -
Phco10g00394 512 ProSitePatterns Glycosyl hydrolases family 1 active site. 415 423 IPR018120 -
Phco10g00394 512 Pfam Glycosyl hydrolase family 1 43 509 IPR001360 GO:0004553|GO:0005975
Phco10g00394 512 Gene3D Glycosidases 25 512 - -
Phco10g00394 512 PRINTS Glycosyl hydrolase family 1 signature 483 495 IPR001360 GO:0004553|GO:0005975
Phco10g00394 512 PRINTS Glycosyl hydrolase family 1 signature 340 354 IPR001360 GO:0004553|GO:0005975
Phco10g00394 512 PRINTS Glycosyl hydrolase family 1 signature 459 476 IPR001360 GO:0004553|GO:0005975
Phco10g00394 512 PRINTS Glycosyl hydrolase family 1 signature 415 423 IPR001360 GO:0004553|GO:0005975
Phco10g00394 512 PRINTS Glycosyl hydrolase family 1 signature 438 449 IPR001360 GO:0004553|GO:0005975
Phco10g00394 512 FunFam Beta-glucosidase 11 29 512 - -
Phco10g00394 512 SUPERFAMILY (Trans)glycosidases 36 510 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00394 Phco-Chr10 3559495 3566296 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00394 10 3559495 3566296 Phco9g01981 9 44735579 44741543 PCT