Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1442 ATGGGAAACTCGCAGGCGAAAAAGCGTGAAGCTGAATATTCCGGAAATGTTGAAGCGAGAAATACTTCCAAAGTTCTATCACCGCGATTTCAACAACAAGAAGAAGCGTCTTTCAATATTCATCTTCATGGTAAGAAAAAGCTCGCTACGAAGGAGAAATATGCTTTAATTCCTGATAATTTTACAACTCTTGAACAGGTTACAAGTGCCTTGAGGCATGAAGGTTTAGAATCCTCAAATCTTATCCTTGGAATTGATTTTACGAAAAGCAATGAATGGACTGGCAGAAGCTCGTTTAATAATAAAAGCCTGCATTCTATTGGAGGGACACCTAACCCTTATGAGAAAGCCATTTCGATTATTGGCAAGACTTTGGCTCCTTTTGATGACGACAACTTGATTCCTTGTCTTGGTTTTGGTGATGCTACGACTCATGATAGCGAAGTGTTTAGCTTTCATGCTGATGATTCTTCATGCCATGGATTTGAGGAAGTTTTGGCCTGCTATCAAAAAATTGTTCCAAACTTGAGTCTTTCAGGACCAACTTCATATGCACCGGTGATTGAGGCTGCAATGGACATTGTTGAGAAAACTCATGGCCAATTCCATGTGTTGGTTATTGTTGCAGATGGCCAGGTTACAAGATATGGCAACAATGAAGGTGGGAAACTTAGTCCTCAAGAAGAGAAAACAATAAAAGCAATCGCTGATGCAAGTTCATATCCTCTTTCTATTGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGATATGAAAAAGTTTGATGACAAGTTACCTGCACGCGATTTCGACAATTTTCAGTTTGTTAACTTCACCGACATTATGTCTAAGAAAATAAGCCCTTCTGCAAAAGAAGCTGCTTTTGCTCTGGCTGCTCTTATGGAGATACCTTTCCAATATAAAGCAGCTCTTGAGCTCGGATTACTTGGTCGTGCAACGGGAAGGGCAAAGAAAATGGTTCCAAGACCTCCTCCGGCTCCTTATTCTCGACATATGCCACCAGAACATTTTCTGAGCAGAATGCCAACATCATCCATGGATGACCAGCGAAACCAAATGGAATGTGCTATATGTCTGACCAATAAAAAGGATTTGGCCTTTGGATGTGGTCACATGACCTGCAGAGATTGTGGATCAAGATTAAGTGATTGTCCGATATGCCGCCAAAGGATCACCAATCGCCTAAGGGTGTTTACGGGATGA 1224 0.415 MGNSQAKKREAEYSGNVEARNTSKVLSPRFQQQEEASFNIHLHGKKKLATKEKYALIPDNFTTLEQVTSALRHEGLESSNLILGIDFTKSNEWTGRSSFNNKSLHSIGGTPNPYEKAISIIGKTLAPFDDDNLIPCLGFGDATTHDSEVFSFHADDSSCHGFEEVLACYQKIVPNLSLSGPTSYAPVIEAAMDIVEKTHGQFHVLVIVADGQVTRYGNNEGGKLSPQEEKTIKAIADASSYPLSIVLVGVGDGPWEDMKKFDDKLPARDFDNFQFVNFTDIMSKKISPSAKEAAFALAALMEIPFQYKAALELGLLGRATGRAKKMVPRPPPAPYSRHMPPEHFLSRMPTSSMDDQRNQMECAICLTNKKDLAFGCGHMTCRDCGSRLSDCPICRQRITNRLRVFTG* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1442 407 MobiDBLite consensus disorder prediction 1 24 - -
Mtr8g1442 407 Pfam Copine 103 316 IPR010734 -
Mtr8g1442 407 SUPERFAMILY vWA-like 79 262 IPR036465 -
Mtr8g1442 407 SMART VWA_4 78 281 IPR002035 -
Mtr8g1442 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 406 IPR013083 -
Mtr8g1442 407 SUPERFAMILY RING/U-box 351 401 - -
Mtr8g1442 407 Pfam Zinc finger, C3HC4 type (RING finger) 359 399 - -
Mtr8g1442 407 SMART ring_2 362 394 IPR001841 -
Mtr8g1442 407 PANTHER COPINE FAMILY PROTEIN 1 30 405 - -
Mtr8g1442 407 ProSiteProfiles Zinc finger RING-type profile. 362 395 IPR001841 -
Mtr8g1442 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 30 405 - -
Mtr8g1442 407 CDD RING-HC_RGLG_plant 361 405 IPR045317 GO:0061630|GO:0070534
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1442 Mtr-Chr8 17984613 17990971 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1442 8 17984613 17990971 Mtr8g1442 8 17984613 17990971 ECH
Mtr2g2178 2 32555077 32559699 Mtr8g1442 8 17984613 17990971 PCT