LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr8g1440	ATGACATCACAACCGTCGATTCCATCTCCTCCTCCGCCATTACCACCGCCACCTGCATCAACGGCACCACCGTCTGAAGGCGGCGTTCGTGTTCGCTGCGCCGGTTGTCGGATGATCTTAACTGTAGCGCCTGGACTAACCGAATTCGCTTGTCCGACGTGTCGAATGCCGCAGATGCTTCCGCCGGAACTCATGGCTAGGGTACACCAAACGGCACCGCCGGTAACTCCGCCGACGCAGAATTTACCGGCGCATGGTATTGATCCTACTAAGATCCAGCTTCCTTGCGCTAAGTGTAAGGCGATTCTCAATGTTCCGCATGGATTATCGAGATTTTCGTGTCCTCAGTGTAATGTTGATCTTGCGGTTGATCTGTCGAAGGTTAAGCAGTTTTTACCTCCGCCGACGCTTGAAGAAGTTAACGAGGTTGCTGTTGAAGTGGAGCGTGATGAAGATGAAGGCGGCATGGCTGGAGAAACATTTACGGATTATCGACCACCAAAAGTATCTATTGGACCTCCACACCCAGACCCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAACCACCGGATCCTACCTATGATCCAAAAACTAAAGATAATCTGGAAAGTTCAAAGGCTTTGTCATGCTTGCAAATTGAGACCTTGGTCTATGCTTGTCAGAGACACCTTCAGCACCTCCCCAGTGGAGCTAGAGCAGGATTCTTTATTGGAGACGGAGCTGGTGTAGGTAAAGGTCGAACAATTGCAGGTCTAATTTGGGAGAACTGGCACCATGGAAGGAGAAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGACGCTAGAAGAGACTTGGATGATGCGGGTGCAACATGTATTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGATCAAGGAGGGAGTTGTTTTCTTGACATACAATAGCCTTATAGCATCTTCAGAGAAAGGTCGTTCTCGACTCCAGCAGCTTGTGCAGTGGTGTGGACCAGGGTTTGACGGCCTTGTAATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTCCCTGAAGCTGGTAGTCAGCCAACACGAACCGGAGAAGCAGTGCTTGAAATTCAGGATAAACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCAACTGGTGCATCTGAACCTCGCAATATGGGTTATATGGTTAGGCTTGGTCTTTGGGGAGATGGAACTTCTTTCTCCGAGTTCCGGGAATTTCTTGGTGCTCTTGATAGAGGGGGTGTTGGAGCTCTAGAATTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGTCGGACACTTAGCTATGAGGGTGCTGAGTTTGAAGTTATTGAAGCGCCATTAGAAGATAAAATGATGGACATGTATAAAAAGGCAGCAGAATTTTGGGCCGAATTACGAGTAGAATTGCTGTCAGCTAGTGCCTTCCTAAATGATAAGCCTAACACTAGTCAACTATGGCGATTATACTGGGCAAGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTACCTGCTACTGTAAGATTAGCAAAGCAAGCATTAGTTGATGGAAAATGTGTAGTCATTGGTCTTCAGAGTACTGGCGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGGGAATTGCTGCTTAAATTTGTGGAAGAAAATTACCCGCTACCAGAAAAACCTCAACTCCTTCCAGGAGAGGATGGTGTTAAGGAGCTCCAAAGGAAGCGGCACTCCGCAACTCCTGATGTTTCATTAAAAGGAAGGGTCAGAAAATCAGCCAAGTTGCAGCCTCCTAGTGATGTAGAAAGCGACGAAGAATCTGAAACTGATTCGGGGATTGAATCTAATGACTCTGATGAGGAGTTTCAAATATGTGAAATTTGCACTACTGAGGAGGAAAGGAAAAAAATGCTACAGTGTTCCTGCTGTGGTAAATTAGTCCATTCCGCATGCTTGATGCCACCAATTGGTGATGTAGTTCCTGAAGAGTGGTCATGCCATTTGTGTAAGGAAAAAACAGATGAATACCTTCAAGCAAGGCAGGCCTACATAGCAGAAATCCAGAAGAGGTATGATGCAGCCTTGGAACGTAGGACAAAAATATTAGAGATCATTCGTTCGTTGGATCTTCCAAATAATCCTTTGGATGACATTACTGACCAGCTAGGGGGGCCAGATAAAGTTGCAGAAATTACAGGAAGGAGAGGCATGCTTGTGAGGGGCCCTGCTGGAAAGGGTGTAACTTATCAGGCTCGTAATACAAAGGAAGTCACCATGGAAATGGTTAACATGCATGAAAAGCAGCTTTTTATGGATGGTAAAAAGTTTGTTGCTATTATCTCTGAAGCTGGATCAGCTGGTGTTTCTTTGCAGGCAGATAGGAGAGCAGCAAATCAGAAAAGAAGAGTTCATTTAACGCTAGAGCTTCCATGGAGTGCTGACCGTGCAATTCAGCAGTTTGGAAGAACTCATAGATCAAATCAAGCTTCGGCACCAGAATACAGGATACTCTTTACTAATCTTGGTGGAGAACGACGATTTGCATCAATTGTTGCGAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGACCGCAGGGCTGGGCCTTCATTAAGTGCTTATAATTACGACAGTGCTTATGGAAAGAGGGCACTGATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTACCTGTTGTACCTCCGGGATGTTCATCTGACAGACCAGATACTGTTCAAGATTTCATCATTCAGGCAAAAGCTGCTCTTGTATCTGTTGGGATAGTTAGGGACTCAGTTCTCGGAAATGGTAAAGATTCTGGAAGGTTATCTGGTCGAATTATTGATTCAGATATGCACGAAGTTGGACGATTCCTCAACCGGCTTTTGGGACTACCTCCTGATATTCAGAATGGGCTATTTGAGTTATTTGTGAGTATCTTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTCGACACGGGCATTGTTGACTTGAAGGCTAATGTCATTGAACTACAGGGGACTCCGAAGACAGTTCATGTTGATCAATTGACTGCGGCTTCTACCGTTTTGTTTACATTCATCTTGGATCGTGGGATCACATGGGAGTCAGCAAGTAACATGCTGAATGAAAAACAAAAGGATGGGCTTGGCTCAGCCAATGATGGCTTCTATGAGTCCAAGAGGGAGTGGTTGGGAAAGCGTCATTTCATTTTAGCATTTGAAAGCTCTGCTTCGGGTATGTATAAGATAGTTCGTCCTCCCGTTGGGGAATCAAACCGGGAGATGCCTCTATCTGAATTAAAAAGTAAATACAGAAAAGTTTCATCCTTAGAAAAGGCTCAAACTGGTTGGGAAGAGGAATATGAAGCTTCATCTAAACAGTGCATGCATGGTCCCAATTGTAAGATTGGCAACTTCTGTACAGTGGGCAGAAGACTACAGGAAGTGAATGTCTTGGGTGGCCTCATTCTTCCTGTTTGGGGAACCATAGAAAAGGCCCTTGCTAAGCAGGCTCGCCTAAGCCATAGGAGGCTACGTGTTGTACGCATAGAAACTACTGTGGATAACAAACGAATTGTTGGACTTCTTGTTCCTAATGCAGCTGTTGAAACTGTGCTTCAAGGCTTAGCATGGGTTCAAGAAATTGATGATTGA	3759	0.4493	MTSQPSIPSPPPPLPPPPASTAPPSEGGVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMARVHQTAPPVTPPTQNLPAHGIDPTKIQLPCAKCKAILNVPHGLSRFSCPQCNVDLAVDLSKVKQFLPPPTLEEVNEVAVEVERDEDEGGMAGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPDPTYDPKTKDNLESSKALSCLQIETLVYACQRHLQHLPSGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDAGATCIEVHALNKLPYSKLDSKSVGIKEGVVFLTYNSLIASSEKGRSRLQQLVQWCGPGFDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLEIQDKLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFSEFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMDMYKKAAEFWAELRVELLSASAFLNDKPNTSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALVDGKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPQLLPGEDGVKELQRKRHSATPDVSLKGRVRKSAKLQPPSDVESDEESETDSGIESNDSDEEFQICEICTTEEERKKMLQCSCCGKLVHSACLMPPIGDVVPEEWSCHLCKEKTDEYLQARQAYIAEIQKRYDAALERRTKILEIIRSLDLPNNPLDDITDQLGGPDKVAEITGRRGMLVRGPAGKGVTYQARNTKEVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMIMYKGIMEQDSLPVVPPGCSSDRPDTVQDFIIQAKAALVSVGIVRDSVLGNGKDSGRLSGRIIDSDMHEVGRFLNRLLGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIELQGTPKTVHVDQLTAASTVLFTFILDRGITWESASNMLNEKQKDGLGSANDGFYESKREWLGKRHFILAFESSASGMYKIVRPPVGESNREMPLSELKSKYRKVSSLEKAQTGWEEEYEASSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGTIEKALAKQARLSHRRLRVVRIETTVDNKRIVGLLVPNAAVETVLQGLAWVQEIDD*	1253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr8g1440	1252	MobiDBLite	consensus disorder prediction	631	647	-	-
	Mtr8g1440	1252	MobiDBLite	consensus disorder prediction	599	647	-	-
	Mtr8g1440	1252	MobiDBLite	consensus disorder prediction	599	630	-	-
	Mtr8g1440	1252	Pfam	C-terminal domain on Strawberry notch homologue	742	1031	IPR026937	-
	Mtr8g1440	1252	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	797	902	IPR027417	-
	Mtr8g1440	1252	MobiDBLite	consensus disorder prediction	148	201	-	-
	Mtr8g1440	1252	SUPERFAMILY	FYVE/PHD zinc finger	644	704	IPR011011	-
	Mtr8g1440	1252	MobiDBLite	consensus disorder prediction	1	23	-	-
	Mtr8g1440	1252	ProSiteProfiles	Zinc finger PHD-type profile.	651	701	IPR019787	-
	Mtr8g1440	1252	PANTHER	STRAWBERRY NOTCH-RELATED	27	1252	IPR026741	GO:0006355
	Mtr8g1440	1252	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	616	705	IPR013083	-
	Mtr8g1440	1252	SMART	PHD_3	653	699	IPR001965	-
	Mtr8g1440	1252	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	418	IPR027417	-
	Mtr8g1440	1252	MobiDBLite	consensus disorder prediction	1	27	-	-
	Mtr8g1440	1252	Pfam	PHD-finger	653	701	IPR019787	-
	Mtr8g1440	1252	ProSitePatterns	Zinc finger PHD-type signature.	654	698	IPR019786	-
	Mtr8g1440	1252	Pfam	P-loop containing NTP hydrolase pore-1	174	474	IPR039187	-
	Mtr8g1440	1252	PANTHER	OS08G0223700 PROTEIN	27	1252	-	-
	Mtr8g1440	1252	Gene3D	-	201	404	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr8g1440	Mtr-Chr8	17905801	17926527	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Mtr8g1440		AAA_34	3e-132	CL0023

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr8g1440	8	17905801	17926527	Mtr8g1440	8	17905801	17926527	ECH