Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1432 ATGGATAACCGAATCTACACATCCTCTTACAACATCCCAACCGGAGCAGCTCCATCAACAGCATCACCCGACCCGAATACAATGTTCCTCGCTCACTATCGCCGCACCGCCGAAGCCGCCGCCGCTGCTTCCTCCATCCGCTACTCCTCCGATTTCGACATTGCTCCTCCTGGAGTTGCTTCTAGAATCTCCACTACTAATCCTTGGGCGAATGCTTTCCCCTCCGCCGCTGCCGCCGTCGCCGCTGCTGCAACAAATGTCGCCTCTGCCGCTTCACTTGATCTTAAACGCTCTTCTGATGCGCTCTACCATCCATCCATTTTGAGTACAATTGGGCAAAACGAAGCTTGGTATACGTCAAACTCACTGGCCAAGCGCCCTAGATATGAAACCGGAAGTACTTTGCCTATTTATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTCGATCATCCTATTTGGGTTCCTGCGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATATTGTTCCAAGTGAAACTCTTCCTGAGAGACCTGGAGAACCAGATTGTCCGTTCTTTCTGAAAACTCAAAAATGCAAGTTTGGTACAAAGTGCAAATTTAATCATCCAAATGTTCCCTCTGAAAATGACGATGTTTCTGGCTTACCTGAGAGGCCACAGGAGCCCCCTTGCGCGTTCTACTTGAAAACTGGAAAATGTAAATACGGTGCTGCATGCAAATTCCATCACCCCAAGGATATCCAGATTCAATTATCTGATGATTTGAGCCGCACTGTTGAGCAGACACAAACAAATTCTTCTGTGTTTGATGGGGCAATAGGAGATACACAGTCAATTATGCCTCTTATATCTCCACTGTCGCATAATAGCAAAGGGCTTCCTGTGAGACCGCGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTTCGGTGCCAGTTGCCGCTACAATCATCCCGACATGAATGCCATTAATCCACCTGTGTCTGCATTGGGCCCTTCTGTTTTGGCGTCCTCAACTGCTAATCTTAACATGGGAGCTATTAATCCAGCTGCATCTTTTTATCAAGCTTTTGACCCCAGTCTGTCAAATCCAATGTCTCAGGTGGGAGTAACAGGGACTATCTATCCTCAGCGCCCTGGACAGATTGAATGTGATTTCTATATGAAATCTGGCATATGTAAATTTGGGGAAAGATGCAAGTACCATCACCCAATCGACCGCACAACATCACTGTCAAAACTGCAATCAAATGTTAAACTTACTGCTGCAGGGTTACCAAGAAGAGAGGGTGTTGAGATCTGCCCATATTATTTAAAAACTGCAACATGCAAGTTTGGCGCAACATGCAAATTTGACCATCCACCACCAGGAGAAGTGATGGAGATGGCTAAGTCACAAGGAGCTTCTACAACCAATGGAGGAGAAACGGAGACCAACGAAGATGTGCCTGTGCCTGGTTCTGCTCCGGAACAATATTGA 1539 0.4678 MDNRIYTSSYNIPTGAAPSTASPDPNTMFLAHYRRTAEAAAAASSIRYSSDFDIAPPGVASRISTTNPWANAFPSAAAAVAAAATNVASAASLDLKRSSDALYHPSILSTIGQNEAWYTSNSLAKRPRYETGSTLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPAGGIPDWKEVPNIVPSETLPERPGEPDCPFFLKTQKCKFGTKCKFNHPNVPSENDDVSGLPERPQEPPCAFYLKTGKCKYGAACKFHHPKDIQIQLSDDLSRTVEQTQTNSSVFDGAIGDTQSIMPLISPLSHNSKGLPVRPREVDCPFYMKTGSCKFGASCRYNHPDMNAINPPVSALGPSVLASSTANLNMGAINPAASFYQAFDPSLSNPMSQVGVTGTIYPQRPGQIECDFYMKSGICKFGERCKYHHPIDRTTSLSKLQSNVKLTAAGLPRREGVEICPYYLKTATCKFGATCKFDHPPPGEVMEMAKSQGASTTNGGETETNEDVPVPGSAPEQY* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1432 512 SMART c3hfinal6 193 220 IPR000571 GO:0046872
Mtr8g1432 512 SMART c3hfinal6 312 339 IPR000571 GO:0046872
Mtr8g1432 512 SMART c3hfinal6 448 475 IPR000571 GO:0046872
Mtr8g1432 512 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Mtr8g1432 512 SMART c3hfinal6 398 425 IPR000571 GO:0046872
Mtr8g1432 512 SMART c3hfinal6 234 261 IPR000571 GO:0046872
Mtr8g1432 512 Gene3D - 397 490 - -
Mtr8g1432 512 Gene3D - 229 346 - -
Mtr8g1432 512 SUPERFAMILY CCCH zinc finger 236 262 IPR036855 GO:0046872
Mtr8g1432 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 195 219 IPR000571 GO:0046872
Mtr8g1432 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 450 475 IPR000571 GO:0046872
Mtr8g1432 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 167 IPR000571 GO:0046872
Mtr8g1432 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 236 261 IPR000571 GO:0046872
Mtr8g1432 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 401 424 IPR000571 GO:0046872
Mtr8g1432 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 314 338 IPR000571 GO:0046872
Mtr8g1432 512 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Mtr8g1432 512 ProSiteProfiles Zinc finger C3H1-type profile. 398 426 IPR000571 GO:0046872
Mtr8g1432 512 SUPERFAMILY CCCH zinc finger 313 339 IPR036855 GO:0046872
Mtr8g1432 512 Gene3D - 184 227 - -
Mtr8g1432 512 Gene3D - 97 180 - -
Mtr8g1432 512 ProSiteProfiles Zinc finger C3H1-type profile. 312 340 IPR000571 GO:0046872
Mtr8g1432 512 SUPERFAMILY CCCH zinc finger 400 427 IPR036855 GO:0046872
Mtr8g1432 512 ProSiteProfiles Zinc finger C3H1-type profile. 234 262 IPR000571 GO:0046872
Mtr8g1432 512 ProSiteProfiles Zinc finger C3H1-type profile. 193 221 IPR000571 GO:0046872
Mtr8g1432 512 MobiDBLite consensus disorder prediction 482 512 - -
Mtr8g1432 512 MobiDBLite consensus disorder prediction 484 498 - -
Mtr8g1432 512 SUPERFAMILY CCCH zinc finger 451 475 IPR036855 GO:0046872
Mtr8g1432 512 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 77 489 - -
Mtr8g1432 512 ProSiteProfiles Zinc finger C3H1-type profile. 448 476 IPR000571 GO:0046872
Mtr8g1432 512 SUPERFAMILY CCCH zinc finger 142 168 IPR036855 GO:0046872
Mtr8g1432 512 PANTHER CCCH ZINC FINGER/TIS11-RELATED 77 489 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1432 Mtr-Chr8 17817529 17826408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1432 434 497 C2H2 Transcription Factor Family AT3G02830 35.385 5.29e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr8g1432 zf-CCCH 2.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1432 - - cam:101499264 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1432 8 17817529 17826408 Mtr8g1432 8 17817529 17826408 ECH