Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3747 ATGGGAAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGACCTTGGTCACCAGAAGAAGATGACAAGCTCAAATCCTACATCCAAGAGCATGGAACCGGTGGTAACTGGATCACTTTGCCACAAAAGATTGGTCTTAAGCGATGTGGCAAAAGTTGTCGGCTGAGGTGGCTAAACTATCTTCGCCCTAACATCAAGCACGGTGGTTTCACCGAAGAAGAAGACAACATCATTTGCAGCCTTTATGTTACTATTGGAAGCAGATGGTCGGTGATTGCGGGTCAATTGCCCGGAAGAACCGATAATGATATAAAGAACTATTGGAACACAAAACTGAAAAAGAAGCTTTTTGGGAAGCATCGTAAAGAACAACAATTACAAGCACGTAATAAATTATTAGCTAGTGCTAATCATGAGAGCAATGGAAGAAGGAGTGAGAATTCTTCATCTAATTTAATTTCTGATCAACATATTTTACAACCATATTGTTGGCCACAAAATATTCATCCATCGTTGACCTACACAAACCAAGGTTCTAGTTTCAACGATCAAGATTCTATTAGAAAATTTCTAATCAAGCTTGGTGGGAGATTCTCTAATGAAGATGATGATTATTATCCATTACATGATGGTGGTGTTCTTTCAAGACAACAAGTTCATGAAGAACAACAAGCAAATTATATTTCTGGTTGCATCAACTCTATTAACAACAACCAAATCTTGCAATATTTCTCACAAACTCAAACTAACCAATATTGTGTTGAGGGAGTAGCAGGACAAGAATTGGTACAAGGACAAGGAAGTTTCACTGAAACAACAACATCTAGTAGTAATAATAATTATTATCCACAAAAGTTAAGTGGGTTGGAATTCATATATGGAGAAGAAATGGATGGTACAATTTGTGGGCAAAGTAGTAACTGGGGTGAGACTGATCAGAGCAGTAGTAGTATGATATATCCTTCTCTTGTTGCATCCAATTTCCAAGAAGAGAAGCCACAAGAATGTGTATTTCAAGAGTTGAGTACTTACCCTAGCTAG 1044 0.3812 MGRAPCCDKANVKKGPWSPEEDDKLKSYIQEHGTGGNWITLPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYVTIGSRWSVIAGQLPGRTDNDIKNYWNTKLKKKLFGKHRKEQQLQARNKLLASANHESNGRRSENSSSNLISDQHILQPYCWPQNIHPSLTYTNQGSSFNDQDSIRKFLIKLGGRFSNEDDDYYPLHDGGVLSRQQVHEEQQANYISGCINSINNNQILQYFSQTQTNQYCVEGVAGQELVQGQGSFTETTTSSSNNNYYPQKLSGLEFIYGEEMDGTICGQSSNWGETDQSSSSMIYPSLVASNFQEEKPQECVFQELSTYPS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3747 347 CDD SANT 71 113 IPR001005 -
Mtr3g3747 347 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mtr3g3747 347 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mtr3g3747 347 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mtr3g3747 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Mtr3g3747 347 Gene3D - 70 143 - -
Mtr3g3747 347 CDD SANT 16 62 IPR001005 -
Mtr3g3747 347 SMART sant 13 64 IPR001005 -
Mtr3g3747 347 SMART sant 67 115 IPR001005 -
Mtr3g3747 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Mtr3g3747 347 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr3g3747 347 PANTHER OS09G0431300 PROTEIN 1 243 - -
Mtr3g3747 347 Gene3D - 7 68 - -
Mtr3g3747 347 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mtr3g3747 347 PANTHER OS09G0431300 PROTEIN 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3747 Mtr-Chr3 51298425 51303456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3747 1 194 MYB Transcription Factor Family AT3G49690 62.944 4.81e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g3747 Myb_DNA-binding 9.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3747 K09422 - gmx:778079 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3747 3 51298425 51303456 Mtr3g3747 3 51298425 51303456 ECH
Mtr1g0418 1 4746674 4748737 Mtr3g3747 3 51298425 51303456 PCT