Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3709 ATGGCTATGGAAGCACTTAACTCACCAACCACCGCTACTCCTTTCACACCCTTTGAGGAACCAAATCTGAGTTATCTTGAAACACCGTGGACGAAAGGTAAACGTTCAAAGCGTTCTCGTATGGATCAATCTTCATGCACTGAAGAAGAGTATCTCGCTCTTTGTCTCATCATGCTTGCTCGCAGCGGAAACAACAACGACAACAAGACTGAATCGGTGCCGGTGCCGGCGCCGCTAACCACCGTTAAACTCAGTCACAAATGCTCAGTCTGCAACAAAGCTTTTTCATCTTATCAAGCCCTAGGTGGACACAAAGCCAGTCACCGGAAAGCTGTTATGTCCGCAACCACCGTTGAAGATCAGACCACCACCACTTCATCTGCCGTGACTACCAGCTCTGCATCCAACGGTAAGAACAAGACTCATGAGTGTTCCATCTGTCACAAATCCTTTCCTACTGGACAGGCTTTGGGAGGACACAAGCGTTGTCACTACGAAGGCAGCGTTGGTGCCGGTGCCGGAAGTAGCGCTGTAACTGCCGCCTCTGAAGGAGTTGGATCGTCTCACAGTCACCACCGTGATTTTGATCTTAACCTACCGGCTTTTCCGGACTTTTCAAAGAAGTTTTTCGTGGATGACGAGGTTTCTAGTCCTTTACCTGCTGCAAAGAAGCCCTGTCTTTTCAAGCTTGAAATTCCTTCTCATTACTGA 711 0.4852 MAMEALNSPTTATPFTPFEEPNLSYLETPWTKGKRSKRSRMDQSSCTEEEYLALCLIMLARSGNNNDNKTESVPVPAPLTTVKLSHKCSVCNKAFSSYQALGGHKASHRKAVMSATTVEDQTTTTSSAVTTSSASNGKNKTHECSICHKSFPTGQALGGHKRCHYEGSVGAGAGSSAVTAASEGVGSSHSHHRDFDLNLPAFPDFSKKFFVDDEVSSPLPAAKKPCLFKLEIPSHY* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3709 236 MobiDBLite consensus disorder prediction 117 136 - -
Mtr3g3709 236 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 227 IPR044653 GO:0003700
Mtr3g3709 236 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g3709 236 Pfam C2H2-type zinc finger 86 110 - -
Mtr3g3709 236 Pfam C2H2-type zinc finger 142 165 - -
Mtr3g3709 236 MobiDBLite consensus disorder prediction 1 18 - -
Mtr3g3709 236 SUPERFAMILY beta-beta-alpha zinc fingers 86 164 IPR036236 -
Mtr3g3709 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Mtr3g3709 236 PANTHER ZINC FINGER PROTEIN ZAT10 1 227 - -
Mtr3g3709 236 Gene3D Classic Zinc Finger 84 164 - -
Mtr3g3709 236 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Mtr3g3709 236 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Mtr3g3709 236 SMART c2h2final6 86 108 IPR013087 -
Mtr3g3709 236 SMART c2h2final6 142 164 IPR013087 -
Mtr3g3709 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 164 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3709 Mtr-Chr3 50890593 50891795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3709 1 232 C2H2 Transcription Factor Family AT1G27730 52.521 4.09e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g3709 zf-C2H2_6 1.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3709 - - gmx:100800095 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3709 3 50890593 50891795 Mtr1g4033 1 51936257 51937329 ECH
Mtr3g3709 3 50890593 50891795 Mtr3g3709 3 50890593 50891795 ECH
Mtr1g0462 1 5351555 5352511 Mtr3g3709 3 50890593 50891795 PCT