Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2178 ATGGGTAACCTCTTAGGTAAAAACAAAAAGCATGAGCATCAAGATACTAGGAATGATCCTAAAGGAAGAGATGAAAGAATCTCTTCATCTAATTTTCCAATTCACAAACCTGTCCCATTACCACTACCACGACAAGTTATTTCTGGACAAAGTTCAAACACCAAGAAACCTCTCAAGAAGTATGATTTGATTCAAGATAACTTCACAACTCTTGAACAGGTTATTGTAGCACTTAGGAAAGAAGGTTTAGAGTCATCAAATCTCATCCTTGGAATTGATTTTACAAAGAGTAATGAGTGGACTGGCCAAATCTCATTCAATAAGAAAAGCCTGCATGCAATTGGAGATACACCAAACCCATATGAGAAGGCCATATCAATTGTTGGCAAGACTTTAGCTCCCTTTGATGAAGACAACTTGATTCCATGCTTTGGCTTTGGTGATGCTACCACACATGATCAAGAAGTATTCAGCTTTCATAGTGATCATTCACCATGCCATGGATTTGAAGAAGTTTTGGCTTGCTACAAAAACATAGTTCCAAACTTGAAACTCTCAGGACCAACTTCTTATGCTCCAGTGATTGAGGCTGCCATAGACATAGTCGAGAAAAGTCATGGCCAATTTCATGTTTTGGTTATCATTGCAGACGGTCAGGTTACAAAAGGTGTAGATAATGAAGTCAGTCCTCAAGAAAAGAAGACAATCAAAGCAATTGCTGATGCAAGTAAATATCCACTTGCTATAGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGGAAAAGTTTGATGACAAAATTCCGTCACGCGATTTTGACAATTTTCAGTTCGTTAACTTCACAAAAATAATGTCTAAAAACACAAGCGCAGCAGAAAAAGAAGCAGCTTTTGCTGTTAACGCTCTCATGGAGATTCCCTTCCAATATAAAGCATGTGTTGAATTACAAAAACTGGGACGTGTAACAGGAAGAGCGAAGAGAATAGTTCCAAAACCATCTCCTGTACCTTACTCTCGGCCTGCACATAGCAATTCAACAACAGATGACCAAAATCAATCTGCCTGCTGCCCTGTTTGTCTGACGAATGCAAAGGATTTGGCATTTGGATGTGGGCACATGACTTGCAGAGATTGTGGATCAAGGTTAAGACATTGTCCAATATGTCGACACAGGATCACTAGTCGTCTTAGAGTGTACAGTGGCTGA 1212 0.3969 MGNLLGKNKKHEHQDTRNDPKGRDERISSSNFPIHKPVPLPLPRQVISGQSSNTKKPLKKYDLIQDNFTTLEQVIVALRKEGLESSNLILGIDFTKSNEWTGQISFNKKSLHAIGDTPNPYEKAISIVGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLACYKNIVPNLKLSGPTSYAPVIEAAIDIVEKSHGQFHVLVIIADGQVTKGVDNEVSPQEKKTIKAIADASKYPLAIVLVGVGDGPWEDMEKFDDKIPSRDFDNFQFVNFTKIMSKNTSAAEKEAAFAVNALMEIPFQYKACVELQKLGRVTGRAKRIVPKPSPVPYSRPAHSNSTTDDQNQSACCPVCLTNAKDLAFGCGHMTCRDCGSRLRHCPICRHRITSRLRVYSG* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2178 403 MobiDBLite consensus disorder prediction 1 30 - -
Mtr2g2178 403 SUPERFAMILY vWA-like 86 266 IPR036465 -
Mtr2g2178 403 MobiDBLite consensus disorder prediction 331 353 - -
Mtr2g2178 403 SUPERFAMILY RING/U-box 351 397 - -
Mtr2g2178 403 Pfam Zinc finger, C3HC4 type (RING finger) 356 396 - -
Mtr2g2178 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 402 IPR013083 -
Mtr2g2178 403 SMART VWA_4 85 285 IPR002035 -
Mtr2g2178 403 CDD RING-HC_RGLG_plant 358 401 IPR045317 GO:0061630|GO:0070534
Mtr2g2178 403 PANTHER UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED 1 402 - -
Mtr2g2178 403 PANTHER COPINE FAMILY PROTEIN 1 1 402 - -
Mtr2g2178 403 Pfam Copine 110 321 IPR010734 -
Mtr2g2178 403 MobiDBLite consensus disorder prediction 1 54 - -
Mtr2g2178 403 Gene3D von Willebrand factor, type A domain 87 300 IPR036465 -
Mtr2g2178 403 ProSiteProfiles Zinc finger RING-type profile. 358 391 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2178 Mtr-Chr2 32555077 32559699 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2178 K16280 - gmx:100790153 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2178 2 32555077 32559699 Mtr2g2178 2 32555077 32559699 ECH
Mtr2g2178 2 32555077 32559699 Mtr8g1442 8 17984613 17990971 PCT