Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4033 ATGGCTTTAGAATTACAAACTCTTAATTCTTCTCCCACAGGAGCTACTACTACTATTCCTATTCCATTCCCACGTTTCAAACAAGAAGAAAATCAAGAACGTGAGTCTTTGGTTAAAAAGAAACGATCAAAACGACCGCGTATTGGTATTGGTAACCCACCCACTGAAGAAGAATATCTTGCTCTCTGTCTCATCATGCTCTCACAAAGCAACAACCAAATTCAATCATCACCGTTGAAGCTCAATCACAAGTGCAGTGTTTGCAACAAAGCTTTTCCATCTTATCAAGCACTTGGTGGTCACAAAGCCAGCCACCGCAAATCTTCATCGGAAAACCAATCCACAACCGTCAACGAGACCATCTCTGTTTCCGTCTCAACCAGTAAGATGCATGAGTGTTCCATTTGTCACAAGAGTTTTCCTACCGGTCAAGCTCTTGGTGGACACAAACGATGCCACTATGAAGGAGTCATCAACAACAACCATAATCATAATAACAGTAACAGCAGTGGAATTACAGTCTCCGACGCCGGCGCCGCGTCCTCCTCCATCAGCCACCGTGGATTTGACCTCAATTTACCAGCGCCTCTCACTGAATTCTGGTCTCCGGTTGGATTCGGCGGTGGAGATTCCAAGAAGAACAAGGTTAATGTTAATCTCGCCGGAATCAATGAACAAGAGGTAGAAAGTCCGTTGCCGGTAACAGCCAAAAGGCCACGTTTATTTTCTGGTGAAGACAATGATGAAACGGTGTAG 756 0.4458 MALELQTLNSSPTGATTTIPIPFPRFKQEENQERESLVKKKRSKRPRIGIGNPPTEEEYLALCLIMLSQSNNQIQSSPLKLNHKCSVCNKAFPSYQALGGHKASHRKSSSENQSTTVNETISVSVSTSKMHECSICHKSFPTGQALGGHKRCHYEGVINNNHNHNNSNSSGITVSDAGAASSSISHRGFDLNLPAPLTEFWSPVGFGGGDSKKNKVNVNLAGINEQEVESPLPVTAKRPRLFSGEDNDETV* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4033 251 MobiDBLite consensus disorder prediction 1 52 - -
Mtr1g4033 251 Pfam C2H2-type zinc finger 131 154 - -
Mtr1g4033 251 Pfam C2H2-type zinc finger 83 107 - -
Mtr1g4033 251 SMART c2h2final6 83 105 IPR013087 -
Mtr1g4033 251 SMART c2h2final6 131 153 IPR013087 -
Mtr1g4033 251 MobiDBLite consensus disorder prediction 1 18 - -
Mtr1g4033 251 MobiDBLite consensus disorder prediction 99 118 - -
Mtr1g4033 251 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 243 IPR044653 GO:0003700
Mtr1g4033 251 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Mtr1g4033 251 Gene3D Classic Zinc Finger 81 153 - -
Mtr1g4033 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Mtr1g4033 251 MobiDBLite consensus disorder prediction 229 251 - -
Mtr1g4033 251 SUPERFAMILY beta-beta-alpha zinc fingers 83 153 IPR036236 -
Mtr1g4033 251 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Mtr1g4033 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 153 IPR013087 -
Mtr1g4033 251 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4033 Mtr-Chr1 51936257 51937329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4033 1 241 C2H2 Transcription Factor Family AT1G27730 44.314 1.53e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g4033 zf-C2H2_6 2.4e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4033 1 51936257 51937329 Mtr1g4033 1 51936257 51937329 ECH
Mtr1g0462 1 5351555 5352511 Mtr1g4033 1 51936257 51937329 ECH
Mtr3g3709 3 50890593 50891795 Mtr1g4033 1 51936257 51937329 ECH