Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0462 ATGGCTCTAGAAGCACTTAACTCACCCACTTCTACTACCCCTAAATTCACCTTCGATGAACCAAATCTTCCATGGACTAAACGTAAACGTTCTAAACGTTCACGTTCATGCACTGAAGAAGAATATCTCGCTCTTTGTCTCATCATGCTTGCTCGTGGCCACACCAACCGCCACGATTTCAATCCTTTGAATCCACCACCAACAACCATTGACAACAACAACAACAACACCAAACTCAGTTACAAATGTTCTGTTTGTAATAAAGAGTTTTCTTCTTATCAAGCGCTCGGTGGACACAAAGCAAGTCACCGGAAAAACTCCGTCGGTGGCGGTGGTGATGATCATCCATCAACTTCCTCAGCTGCTACCACAAGCTCAGCCAACACAAACGGTGGTGGTGTTAGATCTCATGAGTGTTCGATTTGTCATAGGTCGTTTCCGACAGGACAAGCTTTGGGTGGACACAAACGTTGTCACTATGAAGGTGTTGTTGGTGGTGGTGCTTCTGCTGTAACTGTCTCTGAAGGTATGGGATCCACACATAGTCATCAACGTGATTTCGATCTGAATATCCCGGCTTTTCCGGAGTTTGCTAATAAGGTTGGAGAAGATGAAGTTGAAAGTCCTCATCCTGTTATGATGAAGAAGAAAGCTCGTGTTTTCGTGGTGCCCAAGATTGAAATTCCGAATTTTCAGTGA 699 0.4449 MALEALNSPTSTTPKFTFDEPNLPWTKRKRSKRSRSCTEEEYLALCLIMLARGHTNRHDFNPLNPPPTTIDNNNNNTKLSYKCSVCNKEFSSYQALGGHKASHRKNSVGGGGDDHPSTSSAATTSSANTNGGGVRSHECSICHRSFPTGQALGGHKRCHYEGVVGGGASAVTVSEGMGSTHSHQRDFDLNIPAFPEFANKVGEDEVESPHPVMMKKKARVFVVPKIEIPNFQ* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0462 232 PANTHER ZINC FINGER PROTEIN ZAT10 1 220 - -
Mtr1g0462 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Mtr1g0462 232 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Mtr1g0462 232 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Mtr1g0462 232 Pfam C2H2-type zinc finger 137 160 - -
Mtr1g0462 232 Pfam C2H2-type zinc finger 81 105 - -
Mtr1g0462 232 MobiDBLite consensus disorder prediction 97 134 - -
Mtr1g0462 232 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 220 IPR044653 GO:0003700
Mtr1g0462 232 MobiDBLite consensus disorder prediction 112 134 - -
Mtr1g0462 232 MobiDBLite consensus disorder prediction 1 19 - -
Mtr1g0462 232 SMART c2h2final6 81 103 IPR013087 -
Mtr1g0462 232 SMART c2h2final6 137 159 IPR013087 -
Mtr1g0462 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Mtr1g0462 232 MobiDBLite consensus disorder prediction 1 22 - -
Mtr1g0462 232 SUPERFAMILY beta-beta-alpha zinc fingers 81 159 IPR036236 -
Mtr1g0462 232 Gene3D Classic Zinc Finger 78 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0462 Mtr-Chr1 5351555 5352511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0462 1 228 C2H2 Transcription Factor Family AT1G27730 51.220 1.52e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g0462 zf-C2H2_6 7e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0462 1 5351555 5352511 Mtr1g4033 1 51936257 51937329 ECH
Mtr1g0462 1 5351555 5352511 Mtr1g0462 1 5351555 5352511 ECH
Mtr1g0462 1 5351555 5352511 Mtr3g3709 3 50890593 50891795 PCT