Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0442 ATGTCTTCTAAGATGGATAAGATCAAAGTGAAGTATCAACTCAAAAACGAAGATTGGAAACCTTCACCAGTTACAGCTTTAGCTACAAGCATAGACGGCACACGTGTTGCTGCTTCACGTGAAGATGGTTCTTTAGAGCTTTGGCTTGTTTCTGCTAATACAATTGGTTGGCACTGTCAATTGACAATTCATGGAGACCCTAATAGAATTGTTTCTTCGTTAATTTGGTCTCCTGGTGGTGAATTTCCTCATGGTCGTTTGTTTTCTTCTAATATTGATGGTTCTGTTTCTTTCTGGGATCTCCAACAATTGAAACAAACGATGGTGCTTGAATCAACTGGTGTCTCAATCTGGAAAATGGCTGTGACACTGGCTAAAAGTGACGACGTTGAAACTAATGGTCATCACATAGGGAATGGTTATTTGAAGAAATTTCATGGTTCGGATGAAAACGAGAACAGTGAAAGTGATGAAGATTCCGATTCACCCGATGTTCTCAAGCAATCCAGTTCAGTGAAGCCAAGAGTCGCAGTTGCTTTTGATGATGGATGTGTTAAAATTTACACTATATCTGATGCAAATGAATTTATATATTTTAAGTCTCTGAACCGGGTCAAAGGACGAGTTTTAAGTGTGACTTGGAGCACGGATGCTAAATTCATATGTTCAGGAAGTAGTGATGGGATAATTCGAATCTGGGATGCCAAATCAGGTATTGAAGCCCATAATATGTCAGCAGGACTGGGCAGGGACAGTGGACATGAACTTTGTATATGGTCACTACTGTATTTAAGGTCTGGGATACTTGTTAGTGGAGACAGCAGTGGTAGCGTCCAGTTTTGGGATTGCCGTGAAGGAGCTCCCTCTCAACAACCTATTACTAAACACAAGGGAGATGTACATGCTCTGGCAGTAGCCCCTGATCACAATATGTTGTTCTCTGCCGGTGCTGATGGACAGGTTATTCTTTATAAGCTGTCTGAGTCAACGATAGAGAAAGAGAAATGGATATATGTTGATTATGAAGTAGCTAATAAACTTGACGCTCGGGCCTTGACTGTTGCTGTGCCGATAAGTCAAGAAGATGCTTTGCCAGGTGAAAGGATCAAAAGAGCTCGTCGTGAAGAAAAGCCAGATGATTCTAGTTACCACAAATGGGCTCATTCGGGGCATCCCATGCTTATCTCAGCAGGAGATGACACAAAACTTTATGCATACCCCGTAAAAGAATTCACCAATTTTAAAGCTCACTGTATCTGTCCTGTGCCTCAAAGAACACCCATTCAAGTAGCTCTTAATACTTCATTCAATCAGTCACCAATGCTTTTACTGCAGTCTTCACATTGGATAGAAGTCCGTTTGCTGCATCTCAGAAATGTTCGCAGAACTGGAGACTACGCAAAATCTGAAACTGTTGGCCGATTCAAGATTAAGGCATCTCGTAGGATAATTTGTAGCACCCTTGCTAATTCAGGGGAGTTTTTTGCGTTTTCTGATAATGAAAAGCCTACTCTTTATAAAGTGGAGAGATCTGAAGCCGGAAAAATTACATGGAGATTTAGTAAAAGGAAGCTTCCTGAGAGATTACCATTTGCCCATTCAATGATTTTTTCTCATGATTCCTCTTTGTTGATAGTAGCTGGCTATGATAGAAGAATATATGTTGTGGATGTCAATAGCTCAGAACTAGTACATACTTTTACACCCTTTCGTGAACTGCAAGATGATGGATTATCACCAGCCGAACCACCCATCACAAAATTGTTTACTAGTTCTGATAAGCAGTGGTTGGCCGCCGTGAATTGCTTTGGAGATATCTATGTATTTAACATGGATTTACTAAGGCAGCACTGGTTCATTTCAAGATTGGATGGTGCCTCTGTTACAGCTTGTGGATTTTCACCCCAGATCAACAATGTACTGATAGTTACAACCTCTTCAAATCGAGTGTATGAATTCGACGTAGATGCCAAGAAATGGGGGGATTGGTCGGTGCGGAATACATTTGTTCTTCCTAGGAGATTTCACGAGTTTCCTGGTGAAGTCATCGGACTTTCATTCCCTCCCTCTTCAACTTCATCTTCTGTGATGGTTTATAGCTCCAGGGCTATGTGCTTGATTGACTTTCGCTTGCCCGTGAAGCCAGATGAAGGTGAAATGTTTCATACTCGCGAATCAGATGAAAGTGAAATGTTTCTTACTCGAGAATCAGTTGTCAAGAATTCGCCAAATTTTAACGTTAAGAAACGGACAAAATTTAGGAAGAACATTGAAGTTTTGCCAAAGAGCTTTGAAAACTTTGAAGTTTTGCCGTTTGAAAAAGATCATGTCTTATATCTATCTCATATTTCAAATAATCACTTCTTTATGATAGAAAAACCCTGGACCGATGTGGTCAGTAGTTTAGATGTTCAACCAGTCCACAGACATATTTATGGGGCATAG 2445 0.4053 MSSKMDKIKVKYQLKNEDWKPSPVTALATSIDGTRVAASREDGSLELWLVSANTIGWHCQLTIHGDPNRIVSSLIWSPGGEFPHGRLFSSNIDGSVSFWDLQQLKQTMVLESTGVSIWKMAVTLAKSDDVETNGHHIGNGYLKKFHGSDENENSESDEDSDSPDVLKQSSSVKPRVAVAFDDGCVKIYTISDANEFIYFKSLNRVKGRVLSVTWSTDAKFICSGSSDGIIRIWDAKSGIEAHNMSAGLGRDSGHELCIWSLLYLRSGILVSGDSSGSVQFWDCREGAPSQQPITKHKGDVHALAVAPDHNMLFSAGADGQVILYKLSESTIEKEKWIYVDYEVANKLDARALTVAVPISQEDALPGERIKRARREEKPDDSSYHKWAHSGHPMLISAGDDTKLYAYPVKEFTNFKAHCICPVPQRTPIQVALNTSFNQSPMLLLQSSHWIEVRLLHLRNVRRTGDYAKSETVGRFKIKASRRIICSTLANSGEFFAFSDNEKPTLYKVERSEAGKITWRFSKRKLPERLPFAHSMIFSHDSSLLIVAGYDRRIYVVDVNSSELVHTFTPFRELQDDGLSPAEPPITKLFTSSDKQWLAAVNCFGDIYVFNMDLLRQHWFISRLDGASVTACGFSPQINNVLIVTTSSNRVYEFDVDAKKWGDWSVRNTFVLPRRFHEFPGEVIGLSFPPSSTSSSVMVYSSRAMCLIDFRLPVKPDEGEMFHTRESDESEMFLTRESVVKNSPNFNVKKRTKFRKNIEVLPKSFENFEVLPFEKDHVLYLSHISNNHFFMIEKPWTDVVSSLDVQPVHRHIYGA* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0442 814 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 10 813 - -
Mtr1g0442 814 Gene3D - 4 133 IPR015943 GO:0005515
Mtr1g0442 814 MobiDBLite consensus disorder prediction 141 168 - -
Mtr1g0442 814 Gene3D - 134 412 IPR015943 GO:0005515
Mtr1g0442 814 Pfam WD domain, G-beta repeat 293 324 IPR001680 GO:0005515
Mtr1g0442 814 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 238 - -
Mtr1g0442 814 SUPERFAMILY WD40 repeat-like 268 656 IPR036322 GO:0005515
Mtr1g0442 814 SUPERFAMILY WD40 repeat-like 16 331 IPR036322 GO:0005515
Mtr1g0442 814 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 10 813 IPR044622 GO:0010073|GO:0035266
Mtr1g0442 814 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 243 IPR001680 GO:0005515
Mtr1g0442 814 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 334 IPR001680 GO:0005515
Mtr1g0442 814 ProSitePatterns Trp-Asp (WD) repeats signature. 221 235 IPR019775 -
Mtr1g0442 814 Pfam Anaphase-promoting complex subunit 4 WD40 domain 177 247 IPR024977 -
Mtr1g0442 814 Gene3D - 511 731 IPR015943 GO:0005515
Mtr1g0442 814 SMART WD40_4 616 654 IPR001680 GO:0005515
Mtr1g0442 814 SMART WD40_4 286 325 IPR001680 GO:0005515
Mtr1g0442 814 SMART WD40_4 195 234 IPR001680 GO:0005515
Mtr1g0442 814 SMART WD40_4 7 49 IPR001680 GO:0005515
Mtr1g0442 814 SMART WD40_4 103 189 IPR001680 GO:0005515
Mtr1g0442 814 SMART WD40_4 522 557 IPR001680 GO:0005515
Mtr1g0442 814 SMART WD40_4 244 282 IPR001680 GO:0005515
Mtr1g0442 814 SMART WD40_4 56 100 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0442 Mtr-Chr1 5142852 5150271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0442 200 327 Acyl Lipid Metabolism Gene Families AT3G18860 31.783 1.00e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0442 K14548 - gmx:100797494 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0442 1 5142852 5150271 Mtr1g0442 1 5142852 5150271 ECH