Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0434 ATGGCGAATAATCCTCAACAACCTTCTTCTATTCAGTTTCGGCCAGTCATTCATGCACAGCAAGGGCCAACATTTGTTCCCATGACTTCACAACAATTCGGACATGCAGGGCATGCCGTTCCTTCATCTAATGTCGGGATGCCTGCTATTCAAGGTCAGCAATTGCAGTATTCTCAACAAATGCAACAGTTGGCTCCAAGACAAATTCAGCCCGGTCATCCTGTTTCATCATCACAGGGTATACCTATGCCATATATTCAAACAAACAGGCCACTGACATCTGTTCCACAACATGCACAACAAGCTGTTCCTCACATAAACAATCATATGCCTGGCTTGCCTGTTTCAGGAGCACCTCCTCAATCTCTATACACTTTCACACCATCTTATGGTCAGCAGCAAGACAATGCTAATGCATTGCCCCAATACCAGCATCCACCTCAAATGCATGCACCTCCTGCCGGACAACCTTGGTTGTCCTCAGTACCAAAGAGTGCTGCAGCTGTAACGTCTGTACAACCGTCCGGAGTTCAATCATCTGGTACTGCATCAACTGATGCTGCAACTAATACCACTAGCAACAACTCTGCATCTGATTGGCAAGAGCATACTGCTGGTGATGGGAGAAGATATTACTACAACAAGAGTACAAGGCAATCTAGTTGGGAAAAACCTTTGGAGTTGATGTCACCTCTTGAGAGGGCTGATGCATCAACTGTTTGGAAAGAGTTCACTTCTTCAGAGGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCAGTATGGACAATACCAGAAGAACTCAAGTTGGCCCGTGAGCAGGCACATAAAACTATTAGCCAGGGAATGGTGTCAGAAACAAGTGATACATCCAATGCTGCTGCCTCCTCTGCTGCAACATCAACTCCACCAGCTAATGCTGCTAGCTCCAACACTTTGACACCTAATGGTCTTGCTTCAAGCCCATCTTCTGTTACACCAGTTGTTGCCACTGATAATCAACGACCAGTTTCTGGTTTATCAGTGGCCTCTGTTTCCCATTCTGTCGTTACTTCAAGCACCACAGGAGTTGAACCAAGCACCGTTGTAACTGTGAGCACTGCACCTACAGCAGTTGCAGGAAGCTTAGGAGTAGTAGCCAACTCACTTGATTCAAAAATTAATTCCATTGTTGAAAATCAAGCAACTCATGATTCTACTTCTTCTGTCAATGGAACACCTCTTCAAGATATGGAGGAAGCCAAAAAAGGAGTTCCTGTGGTTGGACAAACTAATGTGACTCCTTCAGAGGAGAAAACCAATGATGGTGAAACTTTTGTATATGCAAATAAGCTGGAAGCAAAAAATGCATTTAAAGCGCTTTTGGAATCTGTGAATGTTCATTCTGATTGGACGTGGGAACAGGCAATGAGAGAAATCATCAATGATAAAAGATATAATGCCCTGAAAACACTTGGTGAGCGAAAACAAGCTTTCAACGAGTATTTGGGTCAAAGGAAGAAGCTAGAGGCTGAAGAAAGGCGCATAAAGCAGAAAAAAGCCCGCGAAGAATTCACAAAGATGTTAGAAGAGTGCAAGGAGCTAACATCATCCACAAGATGGAGCAAAGCTATAAGTATGCTTGAAAATGATGAACGATTCAATGCTGTTGAAAGAGTAAGAGATCGGGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGAAAGGAAAAGGAAAATGCTGCTGAGGAACACCGGCGGAATTTAGCAGAATATAGGAAATTTCTGGAGTCCTGTGATTTTGTGAAGGTGAATAGTCATTGGCGAAAAATCCAAGATCGGCTAGAGGATGATGATAGATACTCACTGCTTGAAAAAATTGACCGATTGCTTGTTTTCCAGGACTATATTCGTGACTTGGAGAAGGAGGAAGAGGAACAAAAAAGGATACAAAAGGAACGAGTCCGTCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTAGAAGAACATATTGCTGATGGAGTTCTTACTGCCAAAACACAGTGGCGAGATTATTGCTTGAAGGTCAAAGAGTTGCCTCAATATCAGGCTGTTGCATCAAATACATCTGGTTCTACTCCAAAAGATTTATTTGAGGATGTCTTTGAAAATCTTGAAAAGCAGTATCATGAAGACAAGACACTCATAAAAGATATACTTAAGTCGGGCAAGATCACCGTAGCGACTACATCAGTATTTGAGGACTTCAAGTCTGCTGTATCAGAAGAAGCTACTTGCAAAACAATATCGGAGATCAATTTGAAGCTTTTATTTGAAGAGTTATTAGAGAGAGCTAAGGAGAAGGAGGAGAAAGAAGCTAAGAAACGCCAACGCCTTGCTGATGACTTTACTAACTTGTTATATACACTCAAGGATATTATTACTTCTTCAACATGGGAGGAATGCAAGGCACTTTTTGAGGACACACAAGAATACATTTCAATTGGGAATGAAAGCTATAGCAAAGAAATTTTTGAGGAATACATTACATACTTGAAGGAAAAAGCTAAAGAGAAGGAACGTAAGCGTGAAGAAGAAAAGGCCAAAAAAGAGAAAGAAAGAGAAGAGAAAGAAAAACGTAAAGAGAAGGAGAAAAAAGAGAAGGAAAGAGAACGTGAGAAAGAAAAATCAAAAGAACGACATAAGAAAGATGAATCAGATAGTGATAATCAAGACATGACTGACGGCCATGGTTATAGAGAGGAGAAGAAAAAAGAAAAGGATAAAGAGAGAAAACATCGAAGAAGGCATCAGAGCAGTATGGATGATGTGGATTCTGAAAAAGATGAGAAGGAAGAGTCTAGAAAATCGCGAAGACATGGAAGTGACCGCAAGAAGTCTAGGAAGCATGCAAACTCTCCTGAGTCAGACAATGAAAGTAGGCATAAAAGACACAAGAGGGACCACGGTGACGGTTCGAGGAGAAGTGGATGGAATGAGGAGCTTGAAGATGGGGAGCTTGGTGATGATGCAGTTGCAGAGGTTTAG 3021 0.4174 MANNPQQPSSIQFRPVIHAQQGPTFVPMTSQQFGHAGHAVPSSNVGMPAIQGQQLQYSQQMQQLAPRQIQPGHPVSSSQGIPMPYIQTNRPLTSVPQHAQQAVPHINNHMPGLPVSGAPPQSLYTFTPSYGQQQDNANALPQYQHPPQMHAPPAGQPWLSSVPKSAAAVTSVQPSGVQSSGTASTDAATNTTSNNSASDWQEHTAGDGRRYYYNKSTRQSSWEKPLELMSPLERADASTVWKEFTSSEGRKYYYNKVTQQSVWTIPEELKLAREQAHKTISQGMVSETSDTSNAAASSAATSTPPANAASSNTLTPNGLASSPSSVTPVVATDNQRPVSGLSVASVSHSVVTSSTTGVEPSTVVTVSTAPTAVAGSLGVVANSLDSKINSIVENQATHDSTSSVNGTPLQDMEEAKKGVPVVGQTNVTPSEEKTNDGETFVYANKLEAKNAFKALLESVNVHSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRIKQKKAREEFTKMLEECKELTSSTRWSKAISMLENDERFNAVERVRDREDLFESYMVELERKEKENAAEEHRRNLAEYRKFLESCDFVKVNSHWRKIQDRLEDDDRYSLLEKIDRLLVFQDYIRDLEKEEEEQKRIQKERVRRGERKNRDAFRKLLEEHIADGVLTAKTQWRDYCLKVKELPQYQAVASNTSGSTPKDLFEDVFENLEKQYHEDKTLIKDILKSGKITVATTSVFEDFKSAVSEEATCKTISEINLKLLFEELLERAKEKEEKEAKKRQRLADDFTNLLYTLKDIITSSTWEECKALFEDTQEYISIGNESYSKEIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKEREREKEKSKERHKKDESDSDNQDMTDGHGYREEKKKEKDKERKHRRRHQSSMDDVDSEKDEKEESRKSRRHGSDRKKSRKHANSPESDNESRHKRHKRDHGDGSRRSGWNEELEDGELGDDAVAEV* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0434 1006 Coils Coil 628 648 - -
Mtr1g0434 1006 Coils Coil 840 896 - -
Mtr1g0434 1006 MobiDBLite consensus disorder prediction 926 950 - -
Mtr1g0434 1006 ProSiteProfiles FF domain profile. 652 715 IPR002713 -
Mtr1g0434 1006 ProSiteProfiles WW/rsp5/WWP domain profile. 194 227 IPR001202 GO:0005515
Mtr1g0434 1006 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 7 999 IPR039726 GO:0045292
Mtr1g0434 1006 SUPERFAMILY FF domain 438 499 IPR036517 -
Mtr1g0434 1006 Coils Coil 493 516 - -
Mtr1g0434 1006 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 7 999 - -
Mtr1g0434 1006 SUPERFAMILY FF domain 647 722 IPR036517 -
Mtr1g0434 1006 Gene3D FF domain 782 855 IPR036517 -
Mtr1g0434 1006 SUPERFAMILY FF domain 506 574 IPR036517 -
Mtr1g0434 1006 CDD WW 241 268 IPR001202 GO:0005515
Mtr1g0434 1006 ProSiteProfiles FF domain profile. 445 499 IPR002713 -
Mtr1g0434 1006 MobiDBLite consensus disorder prediction 113 203 - -
Mtr1g0434 1006 SUPERFAMILY FF domain 572 641 IPR036517 -
Mtr1g0434 1006 SMART FF_2 445 499 IPR002713 -
Mtr1g0434 1006 SMART FF_2 654 715 IPR002713 -
Mtr1g0434 1006 SMART FF_2 580 634 IPR002713 -
Mtr1g0434 1006 SMART FF_2 512 567 IPR002713 -
Mtr1g0434 1006 SMART FF_2 787 842 IPR002713 -
Mtr1g0434 1006 MobiDBLite consensus disorder prediction 120 143 - -
Mtr1g0434 1006 Pfam FF domain 656 711 IPR002713 -
Mtr1g0434 1006 Pfam FF domain 583 631 IPR002713 -
Mtr1g0434 1006 Pfam FF domain 514 564 IPR002713 -
Mtr1g0434 1006 Pfam FF domain 447 496 IPR002713 -
Mtr1g0434 1006 Gene3D FF domain 445 500 IPR036517 -
Mtr1g0434 1006 ProSiteProfiles WW/rsp5/WWP domain profile. 235 268 IPR001202 GO:0005515
Mtr1g0434 1006 Gene3D - 236 279 - -
Mtr1g0434 1006 Gene3D - 192 235 - -
Mtr1g0434 1006 ProSiteProfiles FF domain profile. 580 634 IPR002713 -
Mtr1g0434 1006 ProSiteProfiles FF domain profile. 512 567 IPR002713 -
Mtr1g0434 1006 MobiDBLite consensus disorder prediction 850 919 - -
Mtr1g0434 1006 SMART ww_5 236 268 IPR001202 GO:0005515
Mtr1g0434 1006 SMART ww_5 195 227 IPR001202 GO:0005515
Mtr1g0434 1006 MobiDBLite consensus disorder prediction 959 993 - -
Mtr1g0434 1006 CDD WW 198 227 IPR001202 GO:0005515
Mtr1g0434 1006 MobiDBLite consensus disorder prediction 280 331 - -
Mtr1g0434 1006 MobiDBLite consensus disorder prediction 850 1006 - -
Mtr1g0434 1006 SUPERFAMILY WW domain 240 273 IPR036020 GO:0005515
Mtr1g0434 1006 Gene3D FF domain 575 643 IPR036517 -
Mtr1g0434 1006 Gene3D FF domain 501 574 IPR036517 -
Mtr1g0434 1006 Gene3D FF domain 644 726 IPR036517 -
Mtr1g0434 1006 Coils Coil 769 793 - -
Mtr1g0434 1006 MobiDBLite consensus disorder prediction 163 202 - -
Mtr1g0434 1006 Pfam WW domain 241 266 IPR001202 GO:0005515
Mtr1g0434 1006 Pfam WW domain 198 225 IPR001202 GO:0005515
Mtr1g0434 1006 SUPERFAMILY WW domain 199 233 IPR036020 GO:0005515
Mtr1g0434 1006 Coils Coil 561 590 - -
Mtr1g0434 1006 ProSitePatterns WW/rsp5/WWP domain signature. 200 225 IPR001202 GO:0005515
Mtr1g0434 1006 SUPERFAMILY FF domain 780 849 IPR036517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0434 Mtr-Chr1 4984851 5000527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0434 K12821 - gmx:100806019 1340.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0434 1 4984851 5000527 Mtr1g0434 1 4984851 5000527 ECH