Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0418 ATGGGTAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGTCCATGGTCTCCAGAAGAAGATTCTAAACTCAAATCTTACATAGAACAACATGGTACTGGTGGTAACTGGATTGCTCTCCCACAAAAAATTGGCTTGAAGCGTTGTGGAAAGAGCTGTCGTCTCCGGTGGCTAAACTATCTTCGCCCTAATCTCAAACATGGTGGTTTCTCCGAAGAAGAAGATAACATTATTTGCAGCCTTTACATTAGTATTGGAAGCAGCAGGTGGTCGATAATTGCAGCTCAATTGCCAGGAAGAACTGATAATGACATAAAGAACTATTGGAATACAAGGTTGAAAAAGAAGCTTTTGGGGAAACACCGTAAAGATCAACAACAACAAGCACGTAATAGAGGAAATAATGGTGCTATTGTTAAGCAAGAAAGCAATAATAATAGAGTGATGAGTAGTAATGAATTTTCCTTATCAAATTTGGTTCAAGAACAACCATATTTACCACATGTCATGCAACCTTTGCTATCAACACCCCAACCTCCACCACCATCAATGTTGTCATACACAAACCAACAAGGCTTCAATGATCAAGATTCTATTAGAAAACTTCTTATGAAGCTTGGAGGAAGATTTTCAGGTGATTATCATCCTAATACTACTTTTGATGCTTTGAATCTTCAATTTTCAAATGCTACTTCTTCAACTCATGAACAAGTTTATGATCAAGAACATCATGTGGGATCTTCTACTTGTGTTAATTCTTCCAATGATAACAACCATAACCAAGTACAATTTGCAATAAATGGTCAATACTTTGACTCGGTGCAAGAAGAACAAGGCAAGTTCATTCCAGAAATTGATCATATGGTATCTACCAATTATCCACCAAGATTTGATGGGTTGGAATTCTTTTATGGTGAAGAAGACTTGAATATTGATCATAATAAGATACAAGGTTCTAGCACTAATTGGAGTGAAGCTACCACTTCAACTTATCATCATCCTCTTGATTCAAAATACCAAGGTTAA 1029 0.3683 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKDQQQQARNRGNNGAIVKQESNNNRVMSSNEFSLSNLVQEQPYLPHVMQPLLSTPQPPPPSMLSYTNQQGFNDQDSIRKLLMKLGGRFSGDYHPNTTFDALNLQFSNATSSTHEQVYDQEHHVGSSTCVNSSNDNNHNQVQFAINGQYFDSVQEEQGKFIPEIDHMVSTNYPPRFDGLEFFYGEEDLNIDHNKIQGSSTNWSEATTSTYHHPLDSKYQG* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0418 342 Gene3D - 7 68 - -
Mtr1g0418 342 CDD SANT 16 62 IPR001005 -
Mtr1g0418 342 Gene3D - 70 144 - -
Mtr1g0418 342 SMART sant 67 116 IPR001005 -
Mtr1g0418 342 SMART sant 13 64 IPR001005 -
Mtr1g0418 342 MobiDBLite consensus disorder prediction 118 146 - -
Mtr1g0418 342 CDD SANT 71 114 IPR001005 -
Mtr1g0418 342 PANTHER OS09G0431300 PROTEIN 1 340 - -
Mtr1g0418 342 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 340 - -
Mtr1g0418 342 ProSiteProfiles Myb-like domain profile. 63 114 IPR001005 -
Mtr1g0418 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 118 IPR017930 -
Mtr1g0418 342 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mtr1g0418 342 MobiDBLite consensus disorder prediction 130 146 - -
Mtr1g0418 342 SUPERFAMILY Homeodomain-like 11 110 IPR009057 -
Mtr1g0418 342 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mtr1g0418 342 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Mtr1g0418 342 MobiDBLite consensus disorder prediction 319 342 - -
Mtr1g0418 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0418 Mtr-Chr1 4746674 4748737 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0418 1 206 MYB Transcription Factor Family AT3G49690 61.650 7.97e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g0418 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0418 K09422 - gmx:100800290 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0418 1 4746674 4748737 Mtr1g0418 1 4746674 4748737 ECH
Mtr1g0418 1 4746674 4748737 Mtr3g3747 3 51298425 51303456 PCT