Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0416 ATGGAGGAATACACTAATAATCCAAATCCAAATCCAAATTCAAGGCCAAATTTCTTATACTCCATTGCTAGTGGAAACAACCAACACCAACACCAACACAATCATCAACATAATCAGATTCCAATGAACAACTTTCATGGATCAGACAATTGTTTTCAGTCTGATCAAGTACAACATCAACAACACTCTGCTGTGAAAACTGAAGCAAATAGTACTTCACAACTTCACACTCCGATTTTTCATTACCCAGCTTTAATGAGAACAAATATTATTCCACACACCAATATTATGCATAACCATCATCATCAAGGAGGAGGAGGGAGTCCAAGCAGTTCTAATGTTGAAGCTGAAGCTATAAAAGCCAAAATCATTGCTCATCCTCAATATTCTAGTCTTTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCTCCACCGGAAGTGGTGGCTCGTTTGGTTGCGTCTAGGCAAGAATTTGAAGCACGGCAAAGATCTTCAGTTAACTCGAGAGAAACTTCTAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGATATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGAGAAGAATAGAAACACAGCTAAATACACTTTGCAATGGACCCCTTCGGATCTTCCCTGATGATAAAAATGAAGGCGTTGGTTCATCAGAAGAGGATCAAGAGAATAGTGGTGGAGAAACAGATCAACTTCCAGAGATTGATCCTCGAGCAGAAGACCGTGAATTGAAAAACCACTTGCTGAAGAAATATAGTGGTTACTTAAGTAGTCTCAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAATTGCCTAAAGAGGCTAGACAAAAGCTACTTAATTGGTGGGAGTTGCATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTAGCATTGGCTGAGTCAACAGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCAGAAGACATGCAGTTTATGGTGATGGATGGACTGCATCCACAGAGTGCAGCTCTTTATATGGATGGTCATTACATGGCTGATGGTCCCTACCGTTTAGGGCCATGA 1140 0.3965 MEEYTNNPNPNPNSRPNFLYSIASGNNQHQHQHNHQHNQIPMNNFHGSDNCFQSDQVQHQQHSAVKTEANSTSQLHTPIFHYPALMRTNIIPHTNIMHNHHHQGGGGSPSSSNVEAEAIKAKIIAHPQYSSLLQAYMDCQKIGAPPEVVARLVASRQEFEARQRSSVNSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNTLCNGPLRIFPDDKNEGVGSSEEDQENSGGETDQLPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0416 379 ProSitePatterns 'Homeobox' domain signature. 319 342 IPR017970 GO:0000981|GO:0006355
Mtr1g0416 379 Gene3D - 278 351 - -
Mtr1g0416 379 Pfam ELK domain 261 282 IPR005539 GO:0003677
Mtr1g0416 379 Pfam KNOX2 domain 172 218 IPR005541 GO:0003677|GO:0005634
Mtr1g0416 379 SMART KNOX1_2 117 161 IPR005540 GO:0003677|GO:0005634
Mtr1g0416 379 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 371 - -
Mtr1g0416 379 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Mtr1g0416 379 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Mtr1g0416 379 SMART ELK_2 261 282 IPR005539 GO:0003677
Mtr1g0416 379 CDD homeodomain 293 345 IPR001356 GO:0003677
Mtr1g0416 379 SMART KNOX2_2 168 219 IPR005541 GO:0003677|GO:0005634
Mtr1g0416 379 SMART HOX_1 283 348 IPR001356 GO:0003677
Mtr1g0416 379 MobiDBLite consensus disorder prediction 1 21 - -
Mtr1g0416 379 SUPERFAMILY Homeodomain-like 282 356 IPR009057 -
Mtr1g0416 379 MobiDBLite consensus disorder prediction 221 255 - -
Mtr1g0416 379 Pfam KNOX1 domain 118 160 IPR005540 GO:0003677|GO:0005634
Mtr1g0416 379 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 371 - -
Mtr1g0416 379 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0416 Mtr-Chr1 4717767 4723785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0416 48 379 Homeobox Transcription Factor Family AT4G08150 71.386 5.62e-157 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mtr1g0416 KNOX2 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0416 - - gmx:100800822 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0416 1 4717767 4723785 Mtr1g0416 1 4717767 4723785 ECH
Mtr3g4100 3 54793979 54794730 Mtr1g0416 1 4717767 4723785 ECH